4LFBR

Crystal structure of 30s ribosomal subunit from thermus thermophilus
Total Genus 19
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
19
sequence length
73
structure length
73
Chain Sequence
PSRKAKVKATLGEFDLRDYRNVEVLKRFLSETGKILPRRRTGLSAKEQRILAKTIKRARILGLLPFTEKLVRK
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title Crystal Structure of 30S ribosomal subunit from Thermus thermophilus
rcsb
molecule tags Ribosome
molecule keywords 16S rRNA
total genus 19
structure length 73
sequence length 73
ec nomenclature
pdb deposition date 2013-06-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
R PF01084 Ribosomal_S18 Ribosomal protein S18
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.640.10 Few Secondary Structures Irregular 30s Ribosomal Protein S18 Ribosomal protein S18 4lfbR00
4LF4R 1XNQR 4LF5R 4JI4R 4DR1R 1HNZR 4X64R 2UUCR 4B3RR 4DR6R 4JI6R 4LFCR 4JI7R 4X62R 4DUYR 4B3SR 1N36R 3T1YR 4DV7R 4OX9R 4DR4R 2E5LR 5LMUR 2UUAR 4JI5R 4LF7R 4JV5R 4GKKR 4DR2R 1I94R 4B3TR 4DV6R 4JYAR 2HHHR 1FKAR 2UXDR 4JI0R 1N34R 2ZM6R 1N33R 1XMQR 4DV0R 4LF9R 4NXMR 1XMOR 4JI8R 4NXNR 4DV2R 4JI2R 4LF8R 4YHHR 1HNXR 4DV4R 4JI1R 4DR5R 1IBKR 1G1XC 2UXBR 4K0KR 4KHPR 5LMNR 4X66R 2VQFR 4DUZR 4LFAR 4LFBR 4B3MR 2UXCR 2VQER 1J5ER 4LF6R 4GKJR 4DV5R 2F4VR 5BR8R 1HR0R 1HNWR 4DV1R 2UU9R 4DR7R 2UUBR 3OTOR 4YY3R 4X65R 4AQYR 1FJGR 4DV3R 4DR3R 1IBMR 1XNRR 3T1HR 1IBLR 1N32R 4JI3R
chains in the Genus database with same CATH superfamily
4LF4R 1XNQR 4LF5R 4JI4R 4DR1R 1HNZR 4X64R 2UUCR 4B3RR 4DR6R 4JI6R 4LFCR 4JI7R 4X62R 4DUYR 4B3SR 1N36R 3T1YR 4DV7R 4OX9R 4DR4R 2E5LR 5LMUR 2UUAR 4JI5R 4LF7R 4JV5R 4GKKR 4DR2R 1I94R 4B3TR 4DV6R 4JYAR 2HHHR 1FKAR 2UXDR 4JI0R 1N34R 2ZM6R 1N33R 1XMQR 4DV0R 4LF9R 4NXMR 1XMOR 4JI8R 4NXNR 4DV2R 4JI2R 4LF8R 4YHHR 1HNXR 4DV4R 4JI1R 4DR5R 1IBKR 1G1XC 2UXBR 4K0KR 4KHPR 5LMNR 4X66R 2VQFR 4DUZR 4LFAR 4LFBR 4B3MR 2UXCR 2VQER 1J5ER 4LF6R 4GKJR 4DV5R 2F4VR 5BR8R 1HR0R 1HNWR 4DV1R 2UU9R 4DR7R 2UUBR 3OTOR 4YY3R 4X65R 4AQYR 1FJGR 4DV3R 4DR3R 1IBMR 1XNRR 3T1HR 1IBLR 1N32R 4JI3R
chains in the Genus database with same CATH topology
4LF4R 1XNQR 4LF5R 4JI4R 4DR1R 1HNZR 4X64R 2UUCR 4B3RR 4DR6R 4JI6R 4LFCR 4JI7R 4X62R 4DUYR 4B3SR 1N36R 3T1YR 4DV7R 4OX9R 4DR4R 2E5LR 5LMUR 2UUAR 4JI5R 4LF7R 4JV5R 4GKKR 4DR2R 1I94R 4B3TR 4DV6R 4JYAR 2HHHR 1FKAR 2UXDR 4JI0R 1N34R 2ZM6R 1N33R 1XMQR 4DV0R 4LF9R 4NXMR 1XMOR 4JI8R 4NXNR 4DV2R 4JI2R 4LF8R 4YHHR 1HNXR 4DV4R 4JI1R 4DR5R 1IBKR 1G1XC 2UXBR 4K0KR 4KHPR 5LMNR 4X66R 2VQFR 4DUZR 4LFAR 4LFBR 4B3MR 2UXCR 2VQER 1J5ER 4LF6R 4GKJR 4DV5R 2F4VR 5BR8R 1HR0R 1HNWR 4DV1R 2UU9R 4DR7R 2UUBR 3OTOR 4YY3R 4X65R 4AQYR 1FJGR 4DV3R 4DR3R 1IBMR 1XNRR 3T1HR 1IBLR 1N32R 4JI3R
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4LF4 R;  1XNQ R;  4LF5 R;  4JI4 R;  4DR1 R;  1HNZ R;  4X64 R;  2UUC R;  4B3R R;  4DR6 R;  4JI6 R;  4LFC R;  4JI7 R;  4X62 R;  4DUY R;  4B3S R;  1N36 R;  3T1Y R;  4DV7 R;  4OX9 R;  4DR4 R;  2E5L R;  5LMU R;  2UUA R;  4JI5 R;  4LF7 R;  4JV5 R;  4GKK R;  4DR2 R;  1I94 R;  4B3T R;  4DV6 R;  4JYA R;  2HHH R;  1FKA R;  2UXD R;  4JI0 R;  1N34 R;  2ZM6 R;  1N33 R;  1XMQ R;  4DV0 R;  4LF9 R;  4NXM R;  1XMO R;  4JI8 R;  4NXN R;  4DV2 R;  4JI2 R;  4LF8 R;  4YHH R;  1HNX R;  4DV4 R;  4JI1 R;  4DR5 R;  1IBK R;  1G1X C;  2UXB R;  4K0K R;  4KHP R;  5LMN R;  4X66 R;  2VQF R;  4DUZ R;  4LFA R;  4LFB R;  4B3M R;  2UXC R;  2VQE R;  1J5E R;  4LF6 R;  4GKJ R;  4DV5 R;  2F4V R;  5BR8 R;  1HR0 R;  1HNW R;  4DV1 R;  2UU9 R;  4DR7 R;  2UUB R;  3OTO R;  4YY3 R;  4X65 R;  4AQY R;  1FJG R;  4DV3 R;  4DR3 R;  1IBM R;  1XNR R;  3T1H R;  1IBL R;  1N32 R;  4JI3 R; 
#chains in the Genus database with same CATH topology
 4LF4 R;  1XNQ R;  4LF5 R;  4JI4 R;  4DR1 R;  1HNZ R;  4X64 R;  2UUC R;  4B3R R;  4DR6 R;  4JI6 R;  4LFC R;  4JI7 R;  4X62 R;  4DUY R;  4B3S R;  1N36 R;  3T1Y R;  4DV7 R;  4OX9 R;  4DR4 R;  2E5L R;  5LMU R;  2UUA R;  4JI5 R;  4LF7 R;  4JV5 R;  4GKK R;  4DR2 R;  1I94 R;  4B3T R;  4DV6 R;  4JYA R;  2HHH R;  1FKA R;  2UXD R;  4JI0 R;  1N34 R;  2ZM6 R;  1N33 R;  1XMQ R;  4DV0 R;  4LF9 R;  4NXM R;  1XMO R;  4JI8 R;  4NXN R;  4DV2 R;  4JI2 R;  4LF8 R;  4YHH R;  1HNX R;  4DV4 R;  4JI1 R;  4DR5 R;  1IBK R;  1G1X C;  2UXB R;  4K0K R;  4KHP R;  5LMN R;  4X66 R;  2VQF R;  4DUZ R;  4LFA R;  4LFB R;  4B3M R;  2UXC R;  2VQE R;  1J5E R;  4LF6 R;  4GKJ R;  4DV5 R;  2F4V R;  5BR8 R;  1HR0 R;  1HNW R;  4DV1 R;  2UU9 R;  4DR7 R;  2UUB R;  3OTO R;  4YY3 R;  4X65 R;  4AQY R;  1FJG R;  4DV3 R;  4DR3 R;  1IBM R;  1XNR R;  3T1H R;  1IBL R;  1N32 R;  4JI3 R; 
#chains in the Genus database with same CATH homology
 4LF4 R;  1XNQ R;  4LF5 R;  4JI4 R;  4DR1 R;  1HNZ R;  4X64 R;  2UUC R;  4B3R R;  4DR6 R;  4JI6 R;  4LFC R;  4JI7 R;  4X62 R;  4DUY R;  4B3S R;  1N36 R;  3T1Y R;  4DV7 R;  4OX9 R;  4DR4 R;  2E5L R;  5LMU R;  2UUA R;  4JI5 R;  4LF7 R;  4JV5 R;  4GKK R;  4DR2 R;  1I94 R;  4B3T R;  4DV6 R;  4JYA R;  2HHH R;  1FKA R;  2UXD R;  4JI0 R;  1N34 R;  2ZM6 R;  1N33 R;  1XMQ R;  4DV0 R;  4LF9 R;  4NXM R;  1XMO R;  4JI8 R;  4NXN R;  4DV2 R;  4JI2 R;  4LF8 R;  4YHH R;  1HNX R;  4DV4 R;  4JI1 R;  4DR5 R;  1IBK R;  1G1X C;  2UXB R;  4K0K R;  4KHP R;  5LMN R;  4X66 R;  2VQF R;  4DUZ R;  4LFA R;  4LFB R;  4B3M R;  2UXC R;  2VQE R;  1J5E R;  4LF6 R;  4GKJ R;  4DV5 R;  2F4V R;  5BR8 R;  1HR0 R;  1HNW R;  4DV1 R;  2UU9 R;  4DR7 R;  2UUB R;  3OTO R;  4YY3 R;  4X65 R;  4AQY R;  1FJG R;  4DV3 R;  4DR3 R;  1IBM R;  1XNR R;  3T1H R;  1IBL R;  1N32 R;  4JI3 R; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...