4DR3R

Crystal structure of the thermus thermophilus (hb8) 30s ribosomal subunit with streptomycin bound
Total Genus 17
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
17
sequence length
70
structure length
70
Chain Sequence
KAKVKATLGEFDLRDYRNVEVLKRFLSETGKILPRRRTGLSAKEQRILAKTIKRARILGLLPFTEKLVRK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title A structural basis for streptomycin-induced misreading of the genetic code.
pubmed doi rcsb
molecule tags Ribosome/antibiotic
molecule keywords 16S rRNA
total genus 17
structure length 70
sequence length 70
ec nomenclature
pdb deposition date 2012-02-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
R PF01084 Ribosomal_S18 Ribosomal protein S18
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.640.10 Few Secondary Structures Irregular 30s Ribosomal Protein S18 Ribosomal protein S18 4dr3R00
1G1XC 1N32R 4JI8R 2UXCR 4X65R 2UXDR 4DV1R 4DV2R 4LF9R 4JI5R 4GKJR 1HNZR 2HHHR 4OX9R 4B3TR 4DR3R 4LFAR 4X62R 4DV0R 4KHPR 2F4VR 1FJGR 4LF8R 4NXMR 1N34R 4DR2R 3OTOR 4B3SR 4DR6R 2UU9R 1N36R 1HNWR 4LFCR 4JI7R 3T1YR 1FKAR 4K0KR 1J5ER 2E5LR 4LF6R 4GKKR 4DV6R 4DV5R 1N33R 4YHHR 4JI3R 4B3RR 4DR5R 1HNXR 4JI1R 4LF5R 2VQER 4JI2R 4YY3R 4DUZR 1IBMR 4NXNR 4X66R 3T1HR 1XNRR 2UXBR 4DR7R 4DV7R 1IBKR 2UUCR 4JV5R 5LMUR 5LMNR 4JYAR 4DV3R 4DV4R 1XMOR 4JI0R 1I94R 1HR0R 1XNQR 4LF7R 4LF4R 4DR4R 4X64R 5BR8R 4JI6R 1XMQR 4AQYR 1IBLR 2UUAR 4DR1R 4JI4R 2UUBR 4LFBR 4DUYR 4B3MR 2VQFR 2ZM6R
chains in the Genus database with same CATH superfamily
1G1XC 1N32R 4JI8R 2UXCR 4X65R 2UXDR 4DV1R 4DV2R 4LF9R 4JI5R 4GKJR 1HNZR 2HHHR 4OX9R 4B3TR 4DR3R 4LFAR 4X62R 4DV0R 4KHPR 2F4VR 1FJGR 4LF8R 4NXMR 1N34R 4DR2R 3OTOR 4B3SR 4DR6R 2UU9R 1N36R 1HNWR 4LFCR 4JI7R 3T1YR 1FKAR 4K0KR 1J5ER 2E5LR 4LF6R 4GKKR 4DV6R 4DV5R 1N33R 4YHHR 4JI3R 4B3RR 4DR5R 1HNXR 4JI1R 4LF5R 2VQER 4JI2R 4YY3R 4DUZR 1IBMR 4NXNR 4X66R 3T1HR 1XNRR 2UXBR 4DR7R 4DV7R 1IBKR 2UUCR 4JV5R 5LMUR 5LMNR 4JYAR 4DV3R 4DV4R 1XMOR 4JI0R 1I94R 1HR0R 1XNQR 4LF7R 4LF4R 4DR4R 4X64R 5BR8R 4JI6R 1XMQR 4AQYR 1IBLR 2UUAR 4DR1R 4JI4R 2UUBR 4LFBR 4DUYR 4B3MR 2VQFR 2ZM6R
chains in the Genus database with same CATH topology
1G1XC 1N32R 4JI8R 2UXCR 4X65R 2UXDR 4DV1R 4DV2R 4LF9R 4JI5R 4GKJR 1HNZR 2HHHR 4OX9R 4B3TR 4DR3R 4LFAR 4X62R 4DV0R 4KHPR 2F4VR 1FJGR 4LF8R 4NXMR 1N34R 4DR2R 3OTOR 4B3SR 4DR6R 2UU9R 1N36R 1HNWR 4LFCR 4JI7R 3T1YR 1FKAR 4K0KR 1J5ER 2E5LR 4LF6R 4GKKR 4DV6R 4DV5R 1N33R 4YHHR 4JI3R 4B3RR 4DR5R 1HNXR 4JI1R 4LF5R 2VQER 4JI2R 4YY3R 4DUZR 1IBMR 4NXNR 4X66R 3T1HR 1XNRR 2UXBR 4DR7R 4DV7R 1IBKR 2UUCR 4JV5R 5LMUR 5LMNR 4JYAR 4DV3R 4DV4R 1XMOR 4JI0R 1I94R 1HR0R 1XNQR 4LF7R 4LF4R 4DR4R 4X64R 5BR8R 4JI6R 1XMQR 4AQYR 1IBLR 2UUAR 4DR1R 4JI4R 2UUBR 4LFBR 4DUYR 4B3MR 2VQFR 2ZM6R
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1G1X C;  1N32 R;  4JI8 R;  2UXC R;  4X65 R;  2UXD R;  4DV1 R;  4DV2 R;  4LF9 R;  4JI5 R;  4GKJ R;  1HNZ R;  2HHH R;  4OX9 R;  4B3T R;  4DR3 R;  4LFA R;  4X62 R;  4DV0 R;  4KHP R;  2F4V R;  1FJG R;  4LF8 R;  4NXM R;  1N34 R;  4DR2 R;  3OTO R;  4B3S R;  4DR6 R;  2UU9 R;  1N36 R;  1HNW R;  4LFC R;  4JI7 R;  3T1Y R;  1FKA R;  4K0K R;  1J5E R;  2E5L R;  4LF6 R;  4GKK R;  4DV6 R;  4DV5 R;  1N33 R;  4YHH R;  4JI3 R;  4B3R R;  4DR5 R;  1HNX R;  4JI1 R;  4LF5 R;  2VQE R;  4JI2 R;  4YY3 R;  4DUZ R;  1IBM R;  4NXN R;  4X66 R;  3T1H R;  1XNR R;  2UXB R;  4DR7 R;  4DV7 R;  1IBK R;  2UUC R;  4JV5 R;  5LMU R;  5LMN R;  4JYA R;  4DV3 R;  4DV4 R;  1XMO R;  4JI0 R;  1I94 R;  1HR0 R;  1XNQ R;  4LF7 R;  4LF4 R;  4DR4 R;  4X64 R;  5BR8 R;  4JI6 R;  1XMQ R;  4AQY R;  1IBL R;  2UUA R;  4DR1 R;  4JI4 R;  2UUB R;  4LFB R;  4DUY R;  4B3M R;  2VQF R;  2ZM6 R; 
#chains in the Genus database with same CATH topology
 1G1X C;  1N32 R;  4JI8 R;  2UXC R;  4X65 R;  2UXD R;  4DV1 R;  4DV2 R;  4LF9 R;  4JI5 R;  4GKJ R;  1HNZ R;  2HHH R;  4OX9 R;  4B3T R;  4DR3 R;  4LFA R;  4X62 R;  4DV0 R;  4KHP R;  2F4V R;  1FJG R;  4LF8 R;  4NXM R;  1N34 R;  4DR2 R;  3OTO R;  4B3S R;  4DR6 R;  2UU9 R;  1N36 R;  1HNW R;  4LFC R;  4JI7 R;  3T1Y R;  1FKA R;  4K0K R;  1J5E R;  2E5L R;  4LF6 R;  4GKK R;  4DV6 R;  4DV5 R;  1N33 R;  4YHH R;  4JI3 R;  4B3R R;  4DR5 R;  1HNX R;  4JI1 R;  4LF5 R;  2VQE R;  4JI2 R;  4YY3 R;  4DUZ R;  1IBM R;  4NXN R;  4X66 R;  3T1H R;  1XNR R;  2UXB R;  4DR7 R;  4DV7 R;  1IBK R;  2UUC R;  4JV5 R;  5LMU R;  5LMN R;  4JYA R;  4DV3 R;  4DV4 R;  1XMO R;  4JI0 R;  1I94 R;  1HR0 R;  1XNQ R;  4LF7 R;  4LF4 R;  4DR4 R;  4X64 R;  5BR8 R;  4JI6 R;  1XMQ R;  4AQY R;  1IBL R;  2UUA R;  4DR1 R;  4JI4 R;  2UUB R;  4LFB R;  4DUY R;  4B3M R;  2VQF R;  2ZM6 R; 
#chains in the Genus database with same CATH homology
 1G1X C;  1N32 R;  4JI8 R;  2UXC R;  4X65 R;  2UXD R;  4DV1 R;  4DV2 R;  4LF9 R;  4JI5 R;  4GKJ R;  1HNZ R;  2HHH R;  4OX9 R;  4B3T R;  4DR3 R;  4LFA R;  4X62 R;  4DV0 R;  4KHP R;  2F4V R;  1FJG R;  4LF8 R;  4NXM R;  1N34 R;  4DR2 R;  3OTO R;  4B3S R;  4DR6 R;  2UU9 R;  1N36 R;  1HNW R;  4LFC R;  4JI7 R;  3T1Y R;  1FKA R;  4K0K R;  1J5E R;  2E5L R;  4LF6 R;  4GKK R;  4DV6 R;  4DV5 R;  1N33 R;  4YHH R;  4JI3 R;  4B3R R;  4DR5 R;  1HNX R;  4JI1 R;  4LF5 R;  2VQE R;  4JI2 R;  4YY3 R;  4DUZ R;  1IBM R;  4NXN R;  4X66 R;  3T1H R;  1XNR R;  2UXB R;  4DR7 R;  4DV7 R;  1IBK R;  2UUC R;  4JV5 R;  5LMU R;  5LMN R;  4JYA R;  4DV3 R;  4DV4 R;  1XMO R;  4JI0 R;  1I94 R;  1HR0 R;  1XNQ R;  4LF7 R;  4LF4 R;  4DR4 R;  4X64 R;  5BR8 R;  4JI6 R;  1XMQ R;  4AQY R;  1IBL R;  2UUA R;  4DR1 R;  4JI4 R;  2UUB R;  4LFB R;  4DUY R;  4B3M R;  2VQF R;  2ZM6 R; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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