4DV2R

Crystal structure of the thermus thermophilus 30s ribosomal subunit with a 16s rrna mutation, c912a
Total Genus 16
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
16
sequence length
70
structure length
70
Chain Sequence
KAKVKATLGEFDLRDYRNVEVLKRFLSETGKILPRRRTGLSAKEQRILAKTIKRARILGLLPFTEKLVRK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title A structural basis for streptomycin resistance
rcsb
molecule tags Ribosome
molecule keywords 16S rRNA
total genus 16
structure length 70
sequence length 70
ec nomenclature
pdb deposition date 2012-02-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
R PF01084 Ribosomal_S18 Ribosomal protein S18
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.640.10 Few Secondary Structures Irregular 30s Ribosomal Protein S18 Ribosomal protein S18 4dv2R00
1N36R 4X65R 2E5LR 4DV7R 4B3TR 1N32R 2UXCR 4B3RR 4NXNR 2VQER 4B3SR 3T1HR 4DR4R 2UU9R 4YY3R 4X66R 4DUYR 4LFCR 2ZM6R 4JI2R 4DV2R 4X62R 4AQYR 4JI8R 1FKAR 4YHHR 1HR0R 4JV5R 4JI5R 4DV3R 4JI3R 4DR1R 4LF9R 4LF8R 4LFAR 4OX9R 4DV1R 1XMOR 4LFBR 4JI1R 4DR5R 4NXMR 5LMUR 2UUAR 4DR6R 4DR3R 4LF5R 1HNXR 1N33R 4DV4R 4DV0R 4LF4R 1G1XC 2VQFR 2UUBR 1IBKR 4JI7R 1FJGR 2UXBR 1I94R 1XNQR 4DV5R 1XNRR 4JYAR 4DUZR 1IBMR 4KHPR 4X64R 4JI6R 5LMNR 4DR2R 4DR7R 2F4VR 1IBLR 4K0KR 4JI4R 1HNWR 2UUCR 4JI0R 4GKKR 4GKJR 4LF6R 3T1YR 1N34R 5BR8R 2HHHR 1J5ER 1XMQR 4LF7R 2UXDR 1HNZR 4B3MR 4DV6R 3OTOR
chains in the Genus database with same CATH superfamily
1N36R 4X65R 2E5LR 4DV7R 4B3TR 1N32R 2UXCR 4B3RR 4NXNR 2VQER 4B3SR 3T1HR 4DR4R 2UU9R 4YY3R 4X66R 4DUYR 4LFCR 2ZM6R 4JI2R 4DV2R 4X62R 4AQYR 4JI8R 1FKAR 4YHHR 1HR0R 4JV5R 4JI5R 4DV3R 4JI3R 4DR1R 4LF9R 4LF8R 4LFAR 4OX9R 4DV1R 1XMOR 4LFBR 4JI1R 4DR5R 4NXMR 5LMUR 2UUAR 4DR6R 4DR3R 4LF5R 1HNXR 1N33R 4DV4R 4DV0R 4LF4R 1G1XC 2VQFR 2UUBR 1IBKR 4JI7R 1FJGR 2UXBR 1I94R 1XNQR 4DV5R 1XNRR 4JYAR 4DUZR 1IBMR 4KHPR 4X64R 4JI6R 5LMNR 4DR2R 4DR7R 2F4VR 1IBLR 4K0KR 4JI4R 1HNWR 2UUCR 4JI0R 4GKKR 4GKJR 4LF6R 3T1YR 1N34R 5BR8R 2HHHR 1J5ER 1XMQR 4LF7R 2UXDR 1HNZR 4B3MR 4DV6R 3OTOR
chains in the Genus database with same CATH topology
1N36R 4X65R 2E5LR 4DV7R 4B3TR 1N32R 2UXCR 4B3RR 4NXNR 2VQER 4B3SR 3T1HR 4DR4R 2UU9R 4YY3R 4X66R 4DUYR 4LFCR 2ZM6R 4JI2R 4DV2R 4X62R 4AQYR 4JI8R 1FKAR 4YHHR 1HR0R 4JV5R 4JI5R 4DV3R 4JI3R 4DR1R 4LF9R 4LF8R 4LFAR 4OX9R 4DV1R 1XMOR 4LFBR 4JI1R 4DR5R 4NXMR 5LMUR 2UUAR 4DR6R 4DR3R 4LF5R 1HNXR 1N33R 4DV4R 4DV0R 4LF4R 1G1XC 2VQFR 2UUBR 1IBKR 4JI7R 1FJGR 2UXBR 1I94R 1XNQR 4DV5R 1XNRR 4JYAR 4DUZR 1IBMR 4KHPR 4X64R 4JI6R 5LMNR 4DR2R 4DR7R 2F4VR 1IBLR 4K0KR 4JI4R 1HNWR 2UUCR 4JI0R 4GKKR 4GKJR 4LF6R 3T1YR 1N34R 5BR8R 2HHHR 1J5ER 1XMQR 4LF7R 2UXDR 1HNZR 4B3MR 4DV6R 3OTOR
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1N36 R;  4X65 R;  2E5L R;  4DV7 R;  4B3T R;  1N32 R;  2UXC R;  4B3R R;  4NXN R;  2VQE R;  4B3S R;  3T1H R;  4DR4 R;  2UU9 R;  4YY3 R;  4X66 R;  4DUY R;  4LFC R;  2ZM6 R;  4JI2 R;  4DV2 R;  4X62 R;  4AQY R;  4JI8 R;  1FKA R;  4YHH R;  1HR0 R;  4JV5 R;  4JI5 R;  4DV3 R;  4JI3 R;  4DR1 R;  4LF9 R;  4LF8 R;  4LFA R;  4OX9 R;  4DV1 R;  1XMO R;  4LFB R;  4JI1 R;  4DR5 R;  4NXM R;  5LMU R;  2UUA R;  4DR6 R;  4DR3 R;  4LF5 R;  1HNX R;  1N33 R;  4DV4 R;  4DV0 R;  4LF4 R;  1G1X C;  2VQF R;  2UUB R;  1IBK R;  4JI7 R;  1FJG R;  2UXB R;  1I94 R;  1XNQ R;  4DV5 R;  1XNR R;  4JYA R;  4DUZ R;  1IBM R;  4KHP R;  4X64 R;  4JI6 R;  5LMN R;  4DR2 R;  4DR7 R;  2F4V R;  1IBL R;  4K0K R;  4JI4 R;  1HNW R;  2UUC R;  4JI0 R;  4GKK R;  4GKJ R;  4LF6 R;  3T1Y R;  1N34 R;  5BR8 R;  2HHH R;  1J5E R;  1XMQ R;  4LF7 R;  2UXD R;  1HNZ R;  4B3M R;  4DV6 R;  3OTO R; 
#chains in the Genus database with same CATH topology
 1N36 R;  4X65 R;  2E5L R;  4DV7 R;  4B3T R;  1N32 R;  2UXC R;  4B3R R;  4NXN R;  2VQE R;  4B3S R;  3T1H R;  4DR4 R;  2UU9 R;  4YY3 R;  4X66 R;  4DUY R;  4LFC R;  2ZM6 R;  4JI2 R;  4DV2 R;  4X62 R;  4AQY R;  4JI8 R;  1FKA R;  4YHH R;  1HR0 R;  4JV5 R;  4JI5 R;  4DV3 R;  4JI3 R;  4DR1 R;  4LF9 R;  4LF8 R;  4LFA R;  4OX9 R;  4DV1 R;  1XMO R;  4LFB R;  4JI1 R;  4DR5 R;  4NXM R;  5LMU R;  2UUA R;  4DR6 R;  4DR3 R;  4LF5 R;  1HNX R;  1N33 R;  4DV4 R;  4DV0 R;  4LF4 R;  1G1X C;  2VQF R;  2UUB R;  1IBK R;  4JI7 R;  1FJG R;  2UXB R;  1I94 R;  1XNQ R;  4DV5 R;  1XNR R;  4JYA R;  4DUZ R;  1IBM R;  4KHP R;  4X64 R;  4JI6 R;  5LMN R;  4DR2 R;  4DR7 R;  2F4V R;  1IBL R;  4K0K R;  4JI4 R;  1HNW R;  2UUC R;  4JI0 R;  4GKK R;  4GKJ R;  4LF6 R;  3T1Y R;  1N34 R;  5BR8 R;  2HHH R;  1J5E R;  1XMQ R;  4LF7 R;  2UXD R;  1HNZ R;  4B3M R;  4DV6 R;  3OTO R; 
#chains in the Genus database with same CATH homology
 1N36 R;  4X65 R;  2E5L R;  4DV7 R;  4B3T R;  1N32 R;  2UXC R;  4B3R R;  4NXN R;  2VQE R;  4B3S R;  3T1H R;  4DR4 R;  2UU9 R;  4YY3 R;  4X66 R;  4DUY R;  4LFC R;  2ZM6 R;  4JI2 R;  4DV2 R;  4X62 R;  4AQY R;  4JI8 R;  1FKA R;  4YHH R;  1HR0 R;  4JV5 R;  4JI5 R;  4DV3 R;  4JI3 R;  4DR1 R;  4LF9 R;  4LF8 R;  4LFA R;  4OX9 R;  4DV1 R;  1XMO R;  4LFB R;  4JI1 R;  4DR5 R;  4NXM R;  5LMU R;  2UUA R;  4DR6 R;  4DR3 R;  4LF5 R;  1HNX R;  1N33 R;  4DV4 R;  4DV0 R;  4LF4 R;  1G1X C;  2VQF R;  2UUB R;  1IBK R;  4JI7 R;  1FJG R;  2UXB R;  1I94 R;  1XNQ R;  4DV5 R;  1XNR R;  4JYA R;  4DUZ R;  1IBM R;  4KHP R;  4X64 R;  4JI6 R;  5LMN R;  4DR2 R;  4DR7 R;  2F4V R;  1IBL R;  4K0K R;  4JI4 R;  1HNW R;  2UUC R;  4JI0 R;  4GKK R;  4GKJ R;  4LF6 R;  3T1Y R;  1N34 R;  5BR8 R;  2HHH R;  1J5E R;  1XMQ R;  4LF7 R;  2UXD R;  1HNZ R;  4B3M R;  4DV6 R;  3OTO R; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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