4LF8R

Crystal structure of 30s ribosomal subunit from thermus thermophilus
Total Genus 18
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
18
sequence length
73
structure length
73
Chain Sequence
PSRKAKVKATLGEFDLRDYRNVEVLKRFLSETGKILPRRRTGLSAKEQRILAKTIKRARILGLLPFTEKLVRK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal Structure of 30S ribosomal subunit from Thermus thermophilus
rcsb
molecule tags Ribosome
molecule keywords 16S rRNA
total genus 18
structure length 73
sequence length 73
ec nomenclature
pdb deposition date 2013-06-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
R PF01084 Ribosomal_S18 Ribosomal protein S18
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.640.10 Few Secondary Structures Irregular 30s Ribosomal Protein S18 Ribosomal protein S18 4lf8R00
4JI7R 1IBMR 4JI1R 2UXCR 5LMNR 4DR2R 4DR4R 4GKJR 4NXMR 1G1XC 1HNWR 1N34R 2UXDR 3T1YR 1FKAR 1I94R 4JI5R 4JI3R 1IBLR 4LFCR 1HNZR 2UXBR 3T1HR 5LMUR 1HNXR 1XMQR 1FJGR 4DV3R 4DR3R 4YY3R 1IBKR 4DR7R 4JYAR 3OTOR 4DV7R 2UUBR 4LFAR 4DV5R 4X65R 4X62R 2ZM6R 4DV2R 2UUAR 4DR6R 4KHPR 2UUCR 4JI0R 4DV1R 4DR5R 4GKKR 4JV5R 4DUZR 4B3TR 4JI4R 4B3SR 4LF7R 2HHHR 4X66R 2E5LR 4B3MR 4X64R 4LF4R 4LF9R 4DV6R 4B3RR 4LFBR 4DUYR 4DR1R 4LF5R 1XNRR 4NXNR 4AQYR 2VQER 1N32R 4DV4R 4LF6R 4K0KR 1N36R 4JI8R 1N33R 4DV0R 2VQFR 2F4VR 2UU9R 1HR0R 4JI6R 4JI2R 4YHHR 1XMOR 4LF8R 4OX9R 1J5ER 1XNQR 5BR8R
chains in the Genus database with same CATH superfamily
4JI7R 1IBMR 4JI1R 2UXCR 5LMNR 4DR2R 4DR4R 4GKJR 4NXMR 1G1XC 1HNWR 1N34R 2UXDR 3T1YR 1FKAR 1I94R 4JI5R 4JI3R 1IBLR 4LFCR 1HNZR 2UXBR 3T1HR 5LMUR 1HNXR 1XMQR 1FJGR 4DV3R 4DR3R 4YY3R 1IBKR 4DR7R 4JYAR 3OTOR 4DV7R 2UUBR 4LFAR 4DV5R 4X65R 4X62R 2ZM6R 4DV2R 2UUAR 4DR6R 4KHPR 2UUCR 4JI0R 4DV1R 4DR5R 4GKKR 4JV5R 4DUZR 4B3TR 4JI4R 4B3SR 4LF7R 2HHHR 4X66R 2E5LR 4B3MR 4X64R 4LF4R 4LF9R 4DV6R 4B3RR 4LFBR 4DUYR 4DR1R 4LF5R 1XNRR 4NXNR 4AQYR 2VQER 1N32R 4DV4R 4LF6R 4K0KR 1N36R 4JI8R 1N33R 4DV0R 2VQFR 2F4VR 2UU9R 1HR0R 4JI6R 4JI2R 4YHHR 1XMOR 4LF8R 4OX9R 1J5ER 1XNQR 5BR8R
chains in the Genus database with same CATH topology
4JI7R 1IBMR 4JI1R 2UXCR 5LMNR 4DR2R 4DR4R 4GKJR 4NXMR 1G1XC 1HNWR 1N34R 2UXDR 3T1YR 1FKAR 1I94R 4JI5R 4JI3R 1IBLR 4LFCR 1HNZR 2UXBR 3T1HR 5LMUR 1HNXR 1XMQR 1FJGR 4DV3R 4DR3R 4YY3R 1IBKR 4DR7R 4JYAR 3OTOR 4DV7R 2UUBR 4LFAR 4DV5R 4X65R 4X62R 2ZM6R 4DV2R 2UUAR 4DR6R 4KHPR 2UUCR 4JI0R 4DV1R 4DR5R 4GKKR 4JV5R 4DUZR 4B3TR 4JI4R 4B3SR 4LF7R 2HHHR 4X66R 2E5LR 4B3MR 4X64R 4LF4R 4LF9R 4DV6R 4B3RR 4LFBR 4DUYR 4DR1R 4LF5R 1XNRR 4NXNR 4AQYR 2VQER 1N32R 4DV4R 4LF6R 4K0KR 1N36R 4JI8R 1N33R 4DV0R 2VQFR 2F4VR 2UU9R 1HR0R 4JI6R 4JI2R 4YHHR 1XMOR 4LF8R 4OX9R 1J5ER 1XNQR 5BR8R
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4JI7 R;  1IBM R;  4JI1 R;  2UXC R;  5LMN R;  4DR2 R;  4DR4 R;  4GKJ R;  4NXM R;  1G1X C;  1HNW R;  1N34 R;  2UXD R;  3T1Y R;  1FKA R;  1I94 R;  4JI5 R;  4JI3 R;  1IBL R;  4LFC R;  1HNZ R;  2UXB R;  3T1H R;  5LMU R;  1HNX R;  1XMQ R;  1FJG R;  4DV3 R;  4DR3 R;  4YY3 R;  1IBK R;  4DR7 R;  4JYA R;  3OTO R;  4DV7 R;  2UUB R;  4LFA R;  4DV5 R;  4X65 R;  4X62 R;  2ZM6 R;  4DV2 R;  2UUA R;  4DR6 R;  4KHP R;  2UUC R;  4JI0 R;  4DV1 R;  4DR5 R;  4GKK R;  4JV5 R;  4DUZ R;  4B3T R;  4JI4 R;  4B3S R;  4LF7 R;  2HHH R;  4X66 R;  2E5L R;  4B3M R;  4X64 R;  4LF4 R;  4LF9 R;  4DV6 R;  4B3R R;  4LFB R;  4DUY R;  4DR1 R;  4LF5 R;  1XNR R;  4NXN R;  4AQY R;  2VQE R;  1N32 R;  4DV4 R;  4LF6 R;  4K0K R;  1N36 R;  4JI8 R;  1N33 R;  4DV0 R;  2VQF R;  2F4V R;  2UU9 R;  1HR0 R;  4JI6 R;  4JI2 R;  4YHH R;  1XMO R;  4LF8 R;  4OX9 R;  1J5E R;  1XNQ R;  5BR8 R; 
#chains in the Genus database with same CATH topology
 4JI7 R;  1IBM R;  4JI1 R;  2UXC R;  5LMN R;  4DR2 R;  4DR4 R;  4GKJ R;  4NXM R;  1G1X C;  1HNW R;  1N34 R;  2UXD R;  3T1Y R;  1FKA R;  1I94 R;  4JI5 R;  4JI3 R;  1IBL R;  4LFC R;  1HNZ R;  2UXB R;  3T1H R;  5LMU R;  1HNX R;  1XMQ R;  1FJG R;  4DV3 R;  4DR3 R;  4YY3 R;  1IBK R;  4DR7 R;  4JYA R;  3OTO R;  4DV7 R;  2UUB R;  4LFA R;  4DV5 R;  4X65 R;  4X62 R;  2ZM6 R;  4DV2 R;  2UUA R;  4DR6 R;  4KHP R;  2UUC R;  4JI0 R;  4DV1 R;  4DR5 R;  4GKK R;  4JV5 R;  4DUZ R;  4B3T R;  4JI4 R;  4B3S R;  4LF7 R;  2HHH R;  4X66 R;  2E5L R;  4B3M R;  4X64 R;  4LF4 R;  4LF9 R;  4DV6 R;  4B3R R;  4LFB R;  4DUY R;  4DR1 R;  4LF5 R;  1XNR R;  4NXN R;  4AQY R;  2VQE R;  1N32 R;  4DV4 R;  4LF6 R;  4K0K R;  1N36 R;  4JI8 R;  1N33 R;  4DV0 R;  2VQF R;  2F4V R;  2UU9 R;  1HR0 R;  4JI6 R;  4JI2 R;  4YHH R;  1XMO R;  4LF8 R;  4OX9 R;  1J5E R;  1XNQ R;  5BR8 R; 
#chains in the Genus database with same CATH homology
 4JI7 R;  1IBM R;  4JI1 R;  2UXC R;  5LMN R;  4DR2 R;  4DR4 R;  4GKJ R;  4NXM R;  1G1X C;  1HNW R;  1N34 R;  2UXD R;  3T1Y R;  1FKA R;  1I94 R;  4JI5 R;  4JI3 R;  1IBL R;  4LFC R;  1HNZ R;  2UXB R;  3T1H R;  5LMU R;  1HNX R;  1XMQ R;  1FJG R;  4DV3 R;  4DR3 R;  4YY3 R;  1IBK R;  4DR7 R;  4JYA R;  3OTO R;  4DV7 R;  2UUB R;  4LFA R;  4DV5 R;  4X65 R;  4X62 R;  2ZM6 R;  4DV2 R;  2UUA R;  4DR6 R;  4KHP R;  2UUC R;  4JI0 R;  4DV1 R;  4DR5 R;  4GKK R;  4JV5 R;  4DUZ R;  4B3T R;  4JI4 R;  4B3S R;  4LF7 R;  2HHH R;  4X66 R;  2E5L R;  4B3M R;  4X64 R;  4LF4 R;  4LF9 R;  4DV6 R;  4B3R R;  4LFB R;  4DUY R;  4DR1 R;  4LF5 R;  1XNR R;  4NXN R;  4AQY R;  2VQE R;  1N32 R;  4DV4 R;  4LF6 R;  4K0K R;  1N36 R;  4JI8 R;  1N33 R;  4DV0 R;  2VQF R;  2F4V R;  2UU9 R;  1HR0 R;  4JI6 R;  4JI2 R;  4YHH R;  1XMO R;  4LF8 R;  4OX9 R;  1J5E R;  1XNQ R;  5BR8 R; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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