1N33R

Structure of the thermus thermophilus 30s ribosomal subunit bound to codon and near-cognate transfer rna anticodon stem-loop mismatched at the second codon position at the a site with paromomycin
Total Genus 15
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
15
sequence length
73
structure length
73
Chain Sequence
PSRKAKVKATLGEFDLRDYRNVEVLKRFLSETGKILPRRRTGLSGKEQRILAKTIKRARILGLLPFTEKLVRK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Selection of tRNA by the Ribosome Requires a Transition from an Open to a Closed Form
pubmed doi rcsb
molecule tags Ribosome
molecule keywords 16S RIBOSOMAL RNA
total genus 15
structure length 73
sequence length 73
ec nomenclature
pdb deposition date 2002-10-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
R PF01084 Ribosomal_S18 Ribosomal protein S18
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.640.10 Few Secondary Structures Irregular 30s Ribosomal Protein S18 Ribosomal protein S18 1n33R00
4DR5R 4B3TR 4LF7R 1HNWR 4LFCR 4B3RR 1FJGR 4DR4R 4LF5R 1XNQR 4JI8R 4LF4R 1XMQR 5BR8R 1N36R 4NXMR 4YHHR 4LF6R 2ZM6R 2UUBR 2VQFR 4DV0R 4GKJR 5LMNR 1HNXR 4DV7R 4DV4R 4GKKR 2UUCR 2E5LR 4JI3R 2UXCR 4LF8R 4LF9R 4LFAR 4OX9R 2HHHR 2UXBR 1HNZR 1J5ER 1N33R 2UUAR 4JI7R 4JV5R 1XNRR 4NXNR 2UXDR 3T1HR 1IBKR 4DR2R 4JI0R 2VQER 2F4VR 4DUZR 4JI1R 3OTOR 4DV5R 4JI6R 1IBLR 1I94R 4LFBR 4X62R 3T1YR 1XMOR 4B3MR 4DR3R 1N32R 4DR1R 1HR0R 1G1XC 4X64R 4DV3R 4X65R 1N34R 4DR7R 4KHPR 4JI4R 4JYAR 1FKAR 4DV1R 2UU9R 4DV2R 4YY3R 4B3SR 4K0KR 4X66R 4JI2R 4DV6R 4DR6R 4DUYR 5LMUR 4AQYR 4JI5R 1IBMR
chains in the Genus database with same CATH superfamily
4DR5R 4B3TR 4LF7R 1HNWR 4LFCR 4B3RR 1FJGR 4DR4R 4LF5R 1XNQR 4JI8R 4LF4R 1XMQR 5BR8R 1N36R 4NXMR 4YHHR 4LF6R 2ZM6R 2UUBR 2VQFR 4DV0R 4GKJR 5LMNR 1HNXR 4DV7R 4DV4R 4GKKR 2UUCR 2E5LR 4JI3R 2UXCR 4LF8R 4LF9R 4LFAR 4OX9R 2HHHR 2UXBR 1HNZR 1J5ER 1N33R 2UUAR 4JI7R 4JV5R 1XNRR 4NXNR 2UXDR 3T1HR 1IBKR 4DR2R 4JI0R 2VQER 2F4VR 4DUZR 4JI1R 3OTOR 4DV5R 4JI6R 1IBLR 1I94R 4LFBR 4X62R 3T1YR 1XMOR 4B3MR 4DR3R 1N32R 4DR1R 1HR0R 1G1XC 4X64R 4DV3R 4X65R 1N34R 4DR7R 4KHPR 4JI4R 4JYAR 1FKAR 4DV1R 2UU9R 4DV2R 4YY3R 4B3SR 4K0KR 4X66R 4JI2R 4DV6R 4DR6R 4DUYR 5LMUR 4AQYR 4JI5R 1IBMR
chains in the Genus database with same CATH topology
4DR5R 4B3TR 4LF7R 1HNWR 4LFCR 4B3RR 1FJGR 4DR4R 4LF5R 1XNQR 4JI8R 4LF4R 1XMQR 5BR8R 1N36R 4NXMR 4YHHR 4LF6R 2ZM6R 2UUBR 2VQFR 4DV0R 4GKJR 5LMNR 1HNXR 4DV7R 4DV4R 4GKKR 2UUCR 2E5LR 4JI3R 2UXCR 4LF8R 4LF9R 4LFAR 4OX9R 2HHHR 2UXBR 1HNZR 1J5ER 1N33R 2UUAR 4JI7R 4JV5R 1XNRR 4NXNR 2UXDR 3T1HR 1IBKR 4DR2R 4JI0R 2VQER 2F4VR 4DUZR 4JI1R 3OTOR 4DV5R 4JI6R 1IBLR 1I94R 4LFBR 4X62R 3T1YR 1XMOR 4B3MR 4DR3R 1N32R 4DR1R 1HR0R 1G1XC 4X64R 4DV3R 4X65R 1N34R 4DR7R 4KHPR 4JI4R 4JYAR 1FKAR 4DV1R 2UU9R 4DV2R 4YY3R 4B3SR 4K0KR 4X66R 4JI2R 4DV6R 4DR6R 4DUYR 5LMUR 4AQYR 4JI5R 1IBMR
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4DR5 R;  4B3T R;  4LF7 R;  1HNW R;  4LFC R;  4B3R R;  1FJG R;  4DR4 R;  4LF5 R;  1XNQ R;  4JI8 R;  4LF4 R;  1XMQ R;  5BR8 R;  1N36 R;  4NXM R;  4YHH R;  4LF6 R;  2ZM6 R;  2UUB R;  2VQF R;  4DV0 R;  4GKJ R;  5LMN R;  1HNX R;  4DV7 R;  4DV4 R;  4GKK R;  2UUC R;  2E5L R;  4JI3 R;  2UXC R;  4LF8 R;  4LF9 R;  4LFA R;  4OX9 R;  2HHH R;  2UXB R;  1HNZ R;  1J5E R;  1N33 R;  2UUA R;  4JI7 R;  4JV5 R;  1XNR R;  4NXN R;  2UXD R;  3T1H R;  1IBK R;  4DR2 R;  4JI0 R;  2VQE R;  2F4V R;  4DUZ R;  4JI1 R;  3OTO R;  4DV5 R;  4JI6 R;  1IBL R;  1I94 R;  4LFB R;  4X62 R;  3T1Y R;  1XMO R;  4B3M R;  4DR3 R;  1N32 R;  4DR1 R;  1HR0 R;  1G1X C;  4X64 R;  4DV3 R;  4X65 R;  1N34 R;  4DR7 R;  4KHP R;  4JI4 R;  4JYA R;  1FKA R;  4DV1 R;  2UU9 R;  4DV2 R;  4YY3 R;  4B3S R;  4K0K R;  4X66 R;  4JI2 R;  4DV6 R;  4DR6 R;  4DUY R;  5LMU R;  4AQY R;  4JI5 R;  1IBM R; 
#chains in the Genus database with same CATH topology
 4DR5 R;  4B3T R;  4LF7 R;  1HNW R;  4LFC R;  4B3R R;  1FJG R;  4DR4 R;  4LF5 R;  1XNQ R;  4JI8 R;  4LF4 R;  1XMQ R;  5BR8 R;  1N36 R;  4NXM R;  4YHH R;  4LF6 R;  2ZM6 R;  2UUB R;  2VQF R;  4DV0 R;  4GKJ R;  5LMN R;  1HNX R;  4DV7 R;  4DV4 R;  4GKK R;  2UUC R;  2E5L R;  4JI3 R;  2UXC R;  4LF8 R;  4LF9 R;  4LFA R;  4OX9 R;  2HHH R;  2UXB R;  1HNZ R;  1J5E R;  1N33 R;  2UUA R;  4JI7 R;  4JV5 R;  1XNR R;  4NXN R;  2UXD R;  3T1H R;  1IBK R;  4DR2 R;  4JI0 R;  2VQE R;  2F4V R;  4DUZ R;  4JI1 R;  3OTO R;  4DV5 R;  4JI6 R;  1IBL R;  1I94 R;  4LFB R;  4X62 R;  3T1Y R;  1XMO R;  4B3M R;  4DR3 R;  1N32 R;  4DR1 R;  1HR0 R;  1G1X C;  4X64 R;  4DV3 R;  4X65 R;  1N34 R;  4DR7 R;  4KHP R;  4JI4 R;  4JYA R;  1FKA R;  4DV1 R;  2UU9 R;  4DV2 R;  4YY3 R;  4B3S R;  4K0K R;  4X66 R;  4JI2 R;  4DV6 R;  4DR6 R;  4DUY R;  5LMU R;  4AQY R;  4JI5 R;  1IBM R; 
#chains in the Genus database with same CATH homology
 4DR5 R;  4B3T R;  4LF7 R;  1HNW R;  4LFC R;  4B3R R;  1FJG R;  4DR4 R;  4LF5 R;  1XNQ R;  4JI8 R;  4LF4 R;  1XMQ R;  5BR8 R;  1N36 R;  4NXM R;  4YHH R;  4LF6 R;  2ZM6 R;  2UUB R;  2VQF R;  4DV0 R;  4GKJ R;  5LMN R;  1HNX R;  4DV7 R;  4DV4 R;  4GKK R;  2UUC R;  2E5L R;  4JI3 R;  2UXC R;  4LF8 R;  4LF9 R;  4LFA R;  4OX9 R;  2HHH R;  2UXB R;  1HNZ R;  1J5E R;  1N33 R;  2UUA R;  4JI7 R;  4JV5 R;  1XNR R;  4NXN R;  2UXD R;  3T1H R;  1IBK R;  4DR2 R;  4JI0 R;  2VQE R;  2F4V R;  4DUZ R;  4JI1 R;  3OTO R;  4DV5 R;  4JI6 R;  1IBL R;  1I94 R;  4LFB R;  4X62 R;  3T1Y R;  1XMO R;  4B3M R;  4DR3 R;  1N32 R;  4DR1 R;  1HR0 R;  1G1X C;  4X64 R;  4DV3 R;  4X65 R;  1N34 R;  4DR7 R;  4KHP R;  4JI4 R;  4JYA R;  1FKA R;  4DV1 R;  2UU9 R;  4DV2 R;  4YY3 R;  4B3S R;  4K0K R;  4X66 R;  4JI2 R;  4DV6 R;  4DR6 R;  4DUY R;  5LMU R;  4AQY R;  4JI5 R;  1IBM R; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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