1XDY | Genus

Total Genus 81

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	81
sequence length	269
structure length	263
Chain Sequence	KALEFSKPAAWQNNLPLTPADKVSGYNNFYEFGLDKADPAANAGSLKTDPWTLKISGEVAKPLTLDHDDLTRRFPLEERIYRMRCVEAWSMVVPWIGFPLHKLLALAEPTSNAKYVAFETIYAPEQMPGQQDRFIGGGLKYPYVEGLRLDEAMHPLTLMTVGVYGKALPPQNGAPVRLIVPWKYGFKGIKSIVSIKLTRERPPTTWNLAAPDEYGFYANVNPYVDHPRWSQATERFIGSGRQPTLLFNGYADQVASLYRGLDL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 263 atoms

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1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

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263 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Oxidoreductase
source organism	Escherichia coli
publication title	Structural and biochemical identification of a novel bacterial oxidoreductase. pubmed doi rcsb
molecule keywords	Bacterial Sulfite Oxidase
total genus	81
structure length	263
sequence length	269
chains with identical sequence	B, C, D, E, F, G, H, I, J
ec nomenclature
pdb deposition date	2004-09-08

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00174	Oxidored_molyb	Oxidoreductase molybdopterin binding domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.90.420.10	Alpha Beta	Alpha-Beta Complex	Sulfite Oxidase; Chain A, domain 2	Oxidoreductase, molybdopterin-binding domain	1xdyA00

2BIHA 2C9XA 1OGPA 3R18A 2XTSA 2A9CA 3HBGA 2CA3A 3R19A 2BPBA 3HC2A 1XDYA 4PW9A 1XDQA 3HBQA 2A9DA 2A9BA 4PW3A 2BLFA 1SOXA 2A99A 3HBPA 2A9AA 2CA4A 2BIIA
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 2BIH A;  2C9X A;  1OGP A;  3R18 A;  2XTS A;  2A9C A;  3HBG A;  2CA3 A;  3R19 A;  2BPB A;  3HC2 A;  1XDY A;  4PW9 A;  1XDQ A;  3HBQ A;  2A9D A;  2A9B A;  4PW3 A;  2BLF A;  1SOX A;  2A99 A;  3HBP A;  2A9A A;  2CA4 A;  2BII A; 
#chains in the Genus database with same CATH topology
 2BIH A;  2C9X A;  1OGP A;  3R18 A;  2XTS A;  2A9C A;  3HBG A;  2CA3 A;  3R19 A;  2BPB A;  3HC2 A;  1XDY A;  4PW9 A;  1XDQ A;  3HBQ A;  2A9D A;  2A9B A;  4PW3 A;  2BLF A;  1SOX A;  2A99 A;  3HBP A;  2A9A A;  2CA4 A;  2BII A; 
#chains in the Genus database with same CATH homology
 2BIH A;  2C9X A;  1OGP A;  3R18 A;  2XTS A;  2A9C A;  3HBG A;  2CA3 A;  3R19 A;  2BPB A;  3HC2 A;  1XDY A;  4PW9 A;  1XDQ A;  3HBQ A;  2A9D A;  2A9B A;  4PW3 A;  2BLF A;  1SOX A;  2A99 A;  3HBP A;  2A9A A;  2CA4 A;  2BII A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1XDYA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations