1G62A

Crystal structure of s.cerevisiae eif6
Total Genus 69
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
69
sequence length
224
structure length
224
Chain Sequence
MATRTQFENSNEIGVFSKLTNTYCLVAVGGSENFYSAFEAELGDAIPIVHTTIAGTRIIGRMTAGNRRGLLVPTQTTDQELQHLRNSLPDSVKIQRVEERLSALGNVICCNDYVALVHPDIDRETEELISDVLGVEVFRQTISGNILVGSYCSLSNQGGLVHPQTSVQDQEELSSLLQVPLVAGTVNRGSSVVGAGMVVNDYLAVTGLDTTAPELSVIESIFRL
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Translation
molecule keywords RIBOSOME ANTI-ASSOCIATION FACTOR EIF6
publication title Crystal structures of ribosome anti-association factor IF6.
pubmed doi rcsb
source organism Saccharomyces cerevisiae
total genus 69
structure length 224
sequence length 224
ec nomenclature
pdb deposition date 2000-11-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01912 eIF-6 eIF-6 family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.75.10.10 Alpha Beta 5-stranded Propeller L-arginine/glycine Amidinotransferase; Chain A L-arginine/glycine Amidinotransferase; Chain A 1g62A00
2EWOA 2JAJA 2CI7A 2ACIA 4YT9A 1WDAA 2DW5A 5AN9I 4N20A 2CI4A 1H70A 4YTBA 4N2HA 3B1UA 1RXXA 5JDWA 2DEWX 2CI6A 4N2CA 4N2LA 2JDXA 4JDWA 1XKNA 3APMA 2JAIA 8JDWA 1JDWA 2ABRA 3HVMA 3JDWA 4N2IA 4DKTA 4N2NA 5M3QA 2JERA 3H7CX 2CMUA 4N28A 2CI1A 4N2AA 3BPBA 7JDWA 4BOFA 3H7KA 4N2GA 3B1TA 1ZBRA 4X8CA 2AAFA 3I2EA 2DEXX 2CI3A 1WD9A 4N2EA 3I4AA 5AK8A 1VKPA 4N2BA 1LXYA 5HP5A 4E4JA 4N2FA 3P8EA 1BWDA 2DEYX 1G61A 1G62A 3P8PA 2C6ZA 5AK7A 4N22A 4N2MA 4N25A 9JDWA 2JDWA 6JDWA 1WD8A 3RHYA 1S9RA 4X8GA 4N2DA 4YTGA 2CI5A 3APNA 1JDXA 4N26A 2Q3UA 2A9GA 4N2KA 4N24A
chains in the Genus database with same CATH superfamily
2EWOA 2JAJA 2CI7A 2ACIA 4YT9A 1WDAA 2DW5A 5AN9I 4N20A 2CI4A 1H70A 4YTBA 4N2HA 3B1UA 1RXXA 1YNHA 5JDWA 2DEWX 2CI6A 4N2CA 4N2LA 2JDXA 4JDWA 1XKNA 3APMA 2JAIA 8JDWA 1JDWA 2ABRA 3HVMA 3JDWA 4N2IA 4DKTA 4N2NA 5M3QA 2JERA 3H7CX 2CMUA 4N28A 2CI1A 4N2AA 3BPBA 7JDWA 4BOFA 3H7KA 4N2GA 3B1TA 1ZBRA 4X8CA 2AAFA 3I2EA 2DEXX 2CI3A 1WD9A 4N2EA 3I4AA 5AK8A 1YNIA 1VKPA 4N2BA 1YNFA 1LXYA 5HP5A 4E4JA 4N2FA 3P8EA 1BWDA 2DEYX 1G61A 1G62A 3P8PA 2C6ZA 5AK7A 4N22A 4N2MA 4N25A 9JDWA 2JDWA 6JDWA 1WD8A 3RHYA 1S9RA 4X8GA 4N2DA 4YTGA 2CI5A 3APNA 1JDXA 4N26A 2Q3UA 2A9GA 4N2KA 4N24A
chains in the Genus database with same CATH topology
2EWOA 2JAJA 2CI7A 2ACIA 4YT9A 1WDAA 2DW5A 5AN9I 4N20A 2CI4A 1H70A 4YTBA 4N2HA 3B1UA 1RXXA 5JDWA 2DEWX 2CI6A 4N2CA 4N2LA 2JDXA 4JDWA 1XKNA 3APMA 2JAIA 8JDWA 1JDWA 2ABRA 3HVMA 3JDWA 4N2IA 4DKTA 4N2NA 5M3QA 2JERA 3H7CX 2CMUA 4N28A 2CI1A 4N2AA 3BPBA 7JDWA 4BOFA 3H7KA 4N2GA 3B1TA 1ZBRA 4X8CA 2AAFA 3I2EA 2DEXX 2CI3A 1WD9A 4N2EA 3I4AA 5AK8A 1VKPA 4N2BA 1LXYA 5HP5A 4E4JA 4N2FA 3P8EA 1BWDA 2DEYX 1G61A 1G62A 3P8PA 2C6ZA 5AK7A 4N22A 4N2MA 4N25A 9JDWA 2JDWA 6JDWA 1WD8A 3RHYA 1S9RA 4X8GA 4N2DA 4YTGA 2CI5A 3APNA 1JDXA 4N26A 2Q3UA 2A9GA 4N2KA 4N24A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2EWO A;  2JAJ A;  2CI7 A;  2ACI A;  4YT9 A;  1WDA A;  2DW5 A;  5AN9 I;  4N20 A;  2CI4 A;  1H70 A;  4YTB A;  4N2H A;  3B1U A;  1RXX A;  5JDW A;  2DEW X;  2CI6 A;  4N2C A;  4N2L A;  2JDX A;  4JDW A;  1XKN A;  3APM A;  2JAI A;  8JDW A;  1JDW A;  2ABR A;  3HVM A;  3JDW A;  4N2I A;  4DKT A;  4N2N A;  5M3Q A;  2JER A;  3H7C X;  2CMU A;  4N28 A;  2CI1 A;  4N2A A;  3BPB A;  7JDW A;  4BOF A;  3H7K A;  4N2G A;  3B1T A;  1ZBR A;  4X8C A;  2AAF A;  3I2E A;  2DEX X;  2CI3 A;  1WD9 A;  4N2E A;  3I4A A;  5AK8 A;  1VKP A;  4N2B A;  1LXY A;  5HP5 A;  4E4J A;  4N2F A;  3P8E A;  1BWD A;  2DEY X;  1G61 A;  1G62 A;  3P8P A;  2C6Z A;  5AK7 A;  4N22 A;  4N2M A;  4N25 A;  9JDW A;  2JDW A;  6JDW A;  1WD8 A;  3RHY A;  1S9R A;  4X8G A;  4N2D A;  4YTG A;  2CI5 A;  3APN A;  1JDX A;  4N26 A;  2Q3U A;  2A9G A;  4N2K A;  4N24 A; 
#chains in the Genus database with same CATH topology
 2EWO A;  2JAJ A;  2CI7 A;  2ACI A;  4YT9 A;  1WDA A;  2DW5 A;  5AN9 I;  4N20 A;  2CI4 A;  1H70 A;  4YTB A;  4N2H A;  3B1U A;  1RXX A;  1YNH A;  5JDW A;  2DEW X;  2CI6 A;  4N2C A;  4N2L A;  2JDX A;  4JDW A;  1XKN A;  3APM A;  2JAI A;  8JDW A;  1JDW A;  2ABR A;  3HVM A;  3JDW A;  4N2I A;  4DKT A;  4N2N A;  5M3Q A;  2JER A;  3H7C X;  2CMU A;  4N28 A;  2CI1 A;  4N2A A;  3BPB A;  7JDW A;  4BOF A;  3H7K A;  4N2G A;  3B1T A;  1ZBR A;  4X8C A;  2AAF A;  3I2E A;  2DEX X;  2CI3 A;  1WD9 A;  4N2E A;  3I4A A;  5AK8 A;  1YNI A;  1VKP A;  4N2B A;  1YNF A;  1LXY A;  5HP5 A;  4E4J A;  4N2F A;  3P8E A;  1BWD A;  2DEY X;  1G61 A;  1G62 A;  3P8P A;  2C6Z A;  5AK7 A;  4N22 A;  4N2M A;  4N25 A;  9JDW A;  2JDW A;  6JDW A;  1WD8 A;  3RHY A;  1S9R A;  4X8G A;  4N2D A;  4YTG A;  2CI5 A;  3APN A;  1JDX A;  4N26 A;  2Q3U A;  2A9G A;  4N2K A;  4N24 A; 
#chains in the Genus database with same CATH homology
 2EWO A;  2JAJ A;  2CI7 A;  2ACI A;  4YT9 A;  1WDA A;  2DW5 A;  5AN9 I;  4N20 A;  2CI4 A;  1H70 A;  4YTB A;  4N2H A;  3B1U A;  1RXX A;  5JDW A;  2DEW X;  2CI6 A;  4N2C A;  4N2L A;  2JDX A;  4JDW A;  1XKN A;  3APM A;  2JAI A;  8JDW A;  1JDW A;  2ABR A;  3HVM A;  3JDW A;  4N2I A;  4DKT A;  4N2N A;  5M3Q A;  2JER A;  3H7C X;  2CMU A;  4N28 A;  2CI1 A;  4N2A A;  3BPB A;  7JDW A;  4BOF A;  3H7K A;  4N2G A;  3B1T A;  1ZBR A;  4X8C A;  2AAF A;  3I2E A;  2DEX X;  2CI3 A;  1WD9 A;  4N2E A;  3I4A A;  5AK8 A;  1VKP A;  4N2B A;  1LXY A;  5HP5 A;  4E4J A;  4N2F A;  3P8E A;  1BWD A;  2DEY X;  1G61 A;  1G62 A;  3P8P A;  2C6Z A;  5AK7 A;  4N22 A;  4N2M A;  4N25 A;  9JDW A;  2JDW A;  6JDW A;  1WD8 A;  3RHY A;  1S9R A;  4X8G A;  4N2D A;  4YTG A;  2CI5 A;  3APN A;  1JDX A;  4N26 A;  2Q3U A;  2A9G A;  4N2K A;  4N24 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...