2A9GA

Structure of c406a arginine deiminase in complex with l-arginine
Total Genus 139
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
139
sequence length
412
structure length
405
Chain Sequence
TKLGVHSEAGKLRKVMVCSPGLAHQRLTPSNCDELLFDDVIWVNQAKRDHFDFVTKMRERGIDVLEMHNLLTETIQNPEALKWILDRKITADSVGLGLTSELRSWLESLEPRKLAEYLIGGVAADDLPASEGANILKMYREYLGHSSFLLPPLPNTQFTRDTTCWIYGGVTLNPMYWPARRQETLLTTAIYKFHPEFANAEFEIWYGDPDKDHGSSTLEGGDVMPIGNGVVLIGMGERSSRQAIGQVAQSLFAKGAAERVIVAGLPKSRAAMHLDTVFSFCDRDLVTVFPEVVKEIVPFSLRPDPSSPYGMNIRREEKTFLEVVAESLGLKKLRVVETGREQWDDGNNVVCLEPGVVVGYDRNTYTNTLLRKAGVEVITISASELGRGRGGGHAMTCPIVRDPID
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Arginine deiminase
publication title Crystal Structures Representing the Michaelis Complex and the Thiouronium Reaction Intermediate of Pseudomonas aeruginosa Arginine Deiminase.
pubmed doi rcsb
source organism Pseudomonas aeruginosa
total genus 139
structure length 405
sequence length 412
chains with identical sequence B, C, D
ec nomenclature ec 3.5.3.6: Arginine deiminase.
pdb deposition date 2005-07-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02274 Amidinotransf Amidinotransferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.3930.10 Mainly Alpha Orthogonal Bundle Pentein Arginine deiminase 2a9gA02
3.75.10.10 Alpha Beta 5-stranded Propeller L-arginine/glycine Amidinotransferase; Chain A L-arginine/glycine Amidinotransferase; Chain A 2a9gA01
2CI3A 2CMUA 2JAJA 3B1UA 1G61A 4N2BA 2JDWA 4N24A 4N26A 4BOFA 4YT9A 5M3QA 2CI7A 4N2EA 4N2NA 4N22A 3H7CX 2A9GA 3HVMA 5AN9I 2CI6A 4N2CA 1JDXA 2C6ZA 4N28A 2CI1A 1RXXA 3B1TA 4N2KA 1LXYA 2CI5A 6JDWA 2JERA 1VKPA 4N2GA 3APNA 1ZBRA 4N2LA 2EWOA 2DW5A 2ACIA 4N20A 4YTBA 1WD8A 3I2EA 5AK7A 4X8CA 3P8EA 1JDWA 4E4JA 4DKTA 2CI4A 1S9RA 3P8PA 4N25A 3I4AA 8JDWA 1BWDA 1H70A 2JDXA 5HP5A 3RHYA 7JDWA 1XKNA 4N2AA 2DEWX 4JDWA 2ABRA 2DEYX 4N2FA 3JDWA 2DEXX 2AAFA 4YTGA 3BPBA 1G62A 4N2IA 1WDAA 5AK8A 4N2DA 4X8GA 1WD9A 2Q3UA 4N2HA 4N2MA 2JAIA 3H7KA 9JDWA 5JDWA 3APMA
chains in the Genus database with same CATH superfamily
2CI3A 2CMUA 2JAJA 3B1UA 1G61A 4N2BA 2JDWA 4N24A 4N26A 4BOFA 4YT9A 5M3QA 2CI7A 4N2EA 4N2NA 4N22A 3H7CX 2A9GA 3HVMA 5AN9I 2CI6A 4N2CA 1JDXA 2C6ZA 4N28A 2CI1A 1RXXA 3B1TA 4N2KA 1LXYA 2CI5A 1YNFA 6JDWA 2JERA 1VKPA 4N2GA 3APNA 1ZBRA 1YNIA 4N2LA 2EWOA 2DW5A 2ACIA 4N20A 4YTBA 1WD8A 3I2EA 5AK7A 4X8CA 3P8EA 1YNHA 1JDWA 4E4JA 4DKTA 2CI4A 1S9RA 3P8PA 4N25A 3I4AA 8JDWA 1BWDA 1H70A 2JDXA 5HP5A 3RHYA 7JDWA 1XKNA 4N2AA 2DEWX 4JDWA 2ABRA 2DEYX 4N2FA 3JDWA 2DEXX 2AAFA 4YTGA 3BPBA 1G62A 4N2IA 1WDAA 5AK8A 4N2DA 4X8GA 1WD9A 2Q3UA 4N2HA 4N2MA 2JAIA 3H7KA 9JDWA 5JDWA 3APMA
chains in the Genus database with same CATH topology
2CI3A 2CMUA 2JAJA 3B1UA 1G61A 4N2BA 2JDWA 4N24A 4N26A 4BOFA 4YT9A 5M3QA 2CI7A 4N2EA 4N2NA 4N22A 3H7CX 2A9GA 3HVMA 5AN9I 2CI6A 4N2CA 1JDXA 2C6ZA 4N28A 2CI1A 1RXXA 3B1TA 4N2KA 1LXYA 2CI5A 6JDWA 2JERA 1VKPA 4N2GA 3APNA 1ZBRA 4N2LA 2EWOA 2DW5A 2ACIA 4N20A 4YTBA 1WD8A 3I2EA 5AK7A 4X8CA 3P8EA 1JDWA 4E4JA 4DKTA 2CI4A 1S9RA 3P8PA 4N25A 3I4AA 8JDWA 1BWDA 1H70A 2JDXA 5HP5A 3RHYA 7JDWA 1XKNA 4N2AA 2DEWX 4JDWA 2ABRA 2DEYX 4N2FA 3JDWA 2DEXX 2AAFA 4YTGA 3BPBA 1G62A 4N2IA 1WDAA 5AK8A 4N2DA 4X8GA 1WD9A 2Q3UA 4N2HA 4N2MA 2JAIA 3H7KA 9JDWA 5JDWA 3APMA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2CI3 A;  2CMU A;  2JAJ A;  3B1U A;  1G61 A;  4N2B A;  2JDW A;  4N24 A;  4N26 A;  4BOF A;  4YT9 A;  5M3Q A;  2CI7 A;  4N2E A;  4N2N A;  4N22 A;  3H7C X;  2A9G A;  3HVM A;  5AN9 I;  2CI6 A;  4N2C A;  1JDX A;  2C6Z A;  4N28 A;  2CI1 A;  1RXX A;  3B1T A;  4N2K A;  1LXY A;  2CI5 A;  6JDW A;  2JER A;  1VKP A;  4N2G A;  3APN A;  1ZBR A;  4N2L A;  2EWO A;  2DW5 A;  2ACI A;  4N20 A;  4YTB A;  1WD8 A;  3I2E A;  5AK7 A;  4X8C A;  3P8E A;  1JDW A;  4E4J A;  4DKT A;  2CI4 A;  1S9R A;  3P8P A;  4N25 A;  3I4A A;  8JDW A;  1BWD A;  1H70 A;  2JDX A;  5HP5 A;  3RHY A;  7JDW A;  1XKN A;  4N2A A;  2DEW X;  4JDW A;  2ABR A;  2DEY X;  4N2F A;  3JDW A;  2DEX X;  2AAF A;  4YTG A;  3BPB A;  1G62 A;  4N2I A;  1WDA A;  5AK8 A;  4N2D A;  4X8G A;  1WD9 A;  2Q3U A;  4N2H A;  4N2M A;  2JAI A;  3H7K A;  9JDW A;  5JDW A;  3APM A; 
#chains in the Genus database with same CATH topology
 2CI3 A;  2CMU A;  2JAJ A;  3B1U A;  1G61 A;  4N2B A;  2JDW A;  4N24 A;  4N26 A;  4BOF A;  4YT9 A;  5M3Q A;  2CI7 A;  4N2E A;  4N2N A;  4N22 A;  3H7C X;  2A9G A;  3HVM A;  5AN9 I;  2CI6 A;  4N2C A;  1JDX A;  2C6Z A;  4N28 A;  2CI1 A;  1RXX A;  3B1T A;  4N2K A;  1LXY A;  2CI5 A;  1YNF A;  6JDW A;  2JER A;  1VKP A;  4N2G A;  3APN A;  1ZBR A;  1YNI A;  4N2L A;  2EWO A;  2DW5 A;  2ACI A;  4N20 A;  4YTB A;  1WD8 A;  3I2E A;  5AK7 A;  4X8C A;  3P8E A;  1YNH A;  1JDW A;  4E4J A;  4DKT A;  2CI4 A;  1S9R A;  3P8P A;  4N25 A;  3I4A A;  8JDW A;  1BWD A;  1H70 A;  2JDX A;  5HP5 A;  3RHY A;  7JDW A;  1XKN A;  4N2A A;  2DEW X;  4JDW A;  2ABR A;  2DEY X;  4N2F A;  3JDW A;  2DEX X;  2AAF A;  4YTG A;  3BPB A;  1G62 A;  4N2I A;  1WDA A;  5AK8 A;  4N2D A;  4X8G A;  1WD9 A;  2Q3U A;  4N2H A;  4N2M A;  2JAI A;  3H7K A;  9JDW A;  5JDW A;  3APM A; 
#chains in the Genus database with same CATH homology
 2CI3 A;  2CMU A;  2JAJ A;  3B1U A;  1G61 A;  4N2B A;  2JDW A;  4N24 A;  4N26 A;  4BOF A;  4YT9 A;  5M3Q A;  2CI7 A;  4N2E A;  4N2N A;  4N22 A;  3H7C X;  2A9G A;  3HVM A;  5AN9 I;  2CI6 A;  4N2C A;  1JDX A;  2C6Z A;  4N28 A;  2CI1 A;  1RXX A;  3B1T A;  4N2K A;  1LXY A;  2CI5 A;  6JDW A;  2JER A;  1VKP A;  4N2G A;  3APN A;  1ZBR A;  4N2L A;  2EWO A;  2DW5 A;  2ACI A;  4N20 A;  4YTB A;  1WD8 A;  3I2E A;  5AK7 A;  4X8C A;  3P8E A;  1JDW A;  4E4J A;  4DKT A;  2CI4 A;  1S9R A;  3P8P A;  4N25 A;  3I4A A;  8JDW A;  1BWD A;  1H70 A;  2JDX A;  5HP5 A;  3RHY A;  7JDW A;  1XKN A;  4N2A A;  2DEW X;  4JDW A;  2ABR A;  2DEY X;  4N2F A;  3JDW A;  2DEX X;  2AAF A;  4YTG A;  3BPB A;  1G62 A;  4N2I A;  1WDA A;  5AK8 A;  4N2D A;  4X8G A;  1WD9 A;  2Q3U A;  4N2H A;  4N2M A;  2JAI A;  3H7K A;  9JDW A;  5JDW A;  3APM A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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