3JC6 | Genus

Total Genus 45

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	45
sequence length	313
structure length	269
Chain Sequence	DAVFGDRVRRFQEFLDTFTSYRDSVRSIQVYNSNNAANYILPHRIIISLDDLREFDRSFWSGILVEPAYFIPPAEKALTDLADSMDDVPHPWKLSFKGSFGAHALSPRTLTAQHLNKLVSVEGIVTKTSLVRPKLIRSVHYAAKTGRFHYRDYTDATTTLTTRIPTPAIYPTEDTEGNKLTTEYGYSTFIDHQRITVQEMPEMAPAGQLPRSIDVILDDDLVDKTKPGDRVNVVGVFKSLGAGGMNQSNSNTLIGFKTLILGNTVYPLH

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Replication
source organism	Saccharomyces cerevisiae
publication title	Structure of the eukaryotic replicative CMG helicase suggests a pumpjack motion for translocation. pubmed doi rcsb
molecule keywords	DNA replication licensing factor MCM2
total genus	45
structure length	269
sequence length	313
ec nomenclature	ec 3.6.4.12: DNA helicase.
pdb deposition date	2015-11-24

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
3	PF00493	MCM	MCM P-loop domain
3	PF17207	MCM_OB	MCM OB domain
3	PF17855	MCM_lid	MCM AAA-lid domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.1640.10	Alpha Beta	2-Layer Sandwich	mini-chromosome maintenance (MCM) complex, chain A, domain 1	mini-chromosome maintenance (MCM) complex, chain A, domain 1	3jc6301

4YWKA 3JC62 2VL6A 3JC63 4POGA 4YWMA 3JC66 1LTLA 4POFA 5IY0A 4YWLA 4ME3A
chains in the Genus database with same CATH superfamily

4YWKA 3JC62 2VL6A 3JC63 4POGA 3F8TA 4YWMA 3JC66 1LTLA 4POFA 5IY0A 4YWLA 4ME3A
chains in the Genus database with same CATH topology

4YWKA 3JC62 2VL6A 3JC63 4POGA 3F8TA 4YWMA 3JC66 1LTLA 4POFA 5IY0A 4YWLA 4ME3A
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 4YWK A;  3JC6 2;  2VL6 A;  3JC6 3;  4POG A;  4YWM A;  3JC6 6;  1LTL A;  4POF A;  5IY0 A;  4YWL A;  4ME3 A; 
#chains in the Genus database with same CATH topology
 4YWK A;  3JC6 2;  2VL6 A;  3JC6 3;  4POG A;  3F8T A;  4YWM A;  3JC6 6;  1LTL A;  4POF A;  5IY0 A;  4YWL A;  4ME3 A; 
#chains in the Genus database with same CATH homology
 4YWK A;  3JC6 2;  2VL6 A;  3JC6 3;  4POG A;  3F8T A;  4YWM A;  3JC6 6;  1LTL A;  4POF A;  5IY0 A;  4YWL A;  4ME3 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3JC63

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations