3JDWA

Crystal structure and mechanism of l-arginine: glycine amidinotransferase: a mitochondrial enzyme involved in creatine biosynthesis
Total Genus 126
50100150200250300350020406080100120
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
126
sequence length
360
structure length
360
Chain Sequence
CPVSSYNEWDPLEEVIVGRAENACVPPFTIEVKANTYEKYWPFYQKQGGHYFPKDHLKKAVAEIEEMCNILKTEGVTVRRPDPIDWSLKYKTPDFESTGLYSAMPRDILIVVGNEIIEAPMAWRSRFFEYRAYRSIIKDYFHRGAKWTTAPKPTMADELYNQDYPIHSVEDRHKLAAQGKFVTTEFEPCFDAADFIRAGRDIFAQRSQVTNYLGIEWMRRHLAPDYRVHIISFKDPNPMHIDATFNIIGPGIVLSNPDRPCHQIDLFKKAGWTIITPPTPIIPDDHPLWMSSKWLSMNVLMLDEKRVMVDANEVPIQKMFEKLGITTIKVNIRNANSLGGGFHCWTCDVRRRGTLQSYLDA
5010015020025030035035030025020015010050
020406080100120Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
3H1 (101-103)EMPTYTVIa1 (285-288)S1 (75-80)TVIII1 (64-67)AH3 (117-137)O1 (90-92)AH1 (93-97)S15 (336-338)3H4 (192-195)AH2 (104-110)AH5 (234-241)TII2 (110-113)TI1 (148-151)TI3 (189-192)S6 (158-161)TI2 (155-158)TVIII2 (165-168)3H2 (168-170)S7 (172-175)S8 (178-181)TII'1 (175-178)S9 (209-212)AH4 (196-206)TI7 (346-349)TI9 (355-358)3H5 (220-222)TI4 (224-227)O2 (232-234)S10 (258-261)3H6 (255-257)TVIII3 (244-247)AH6 (275-285)S12 (290-294)S11 (264-268)TII'2 (261-264)3H7 (358-360)TI5 (270-273)TII3 (312-315)S13 (308-312)TIV4 (298-301)TI8 (351-354)TI6 (319-322)TIV8 (320-323)AH7 (326-333)TII1 (83-86)TIV1 (70-73)S2 (87-88)S5 (152-155)S4 (140-142)3H3 (187-189)S14 (315-318)S3 (113-114)TIV5 (304-307)TIV2 (228-231)Updating...
connected with : NaN
molecule tags Transferase
source organism Homo sapiens
publication title Crystal structure and mechanism of human L-arginine:glycine amidinotransferase: a mitochondrial enzyme involved in creatine biosynthesis.
pubmed doi rcsb
molecule keywords L-ARGININE\:GLYCINE AMIDINOTRANSFERASE
total genus 126
structure length 360
sequence length 360
ec nomenclature ec 2.1.4.1: Glycine amidinotransferase.
pdb deposition date 1997-01-24
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.75.10.10 Alpha Beta 5-stranded Propeller L-arginine/glycine Amidinotransferase; Chain A L-arginine/glycine Amidinotransferase; Chain A 3jdwA00
4E4JA 4N2BA 4BOFA 3H7KA 4YTGA 1WDAA 2CI4A 2CI6A 4YT9A 3P8PA 8JDWA 4N2DA 2A9GA 4N2HA 1VKPA 1ZBRA 2DEXX 4N2IA 4N2EA 5AN9I 4N28A 4N2FA 4X8CA 1WD9A 3H7CX 2JAJA 4DKTA 1G62A 4N2NA 2JAIA 4N20A 2CMUA 3B1UA 2DEYX 2DEWX 4N26A 4N22A 3B1TA 3I2EA 7JDWA 2CI3A 4N2KA 2DW5A 5AK7A 3JDWA 1JDWA 1XKNA 3RHYA 1S9RA 5JDWA 2JDWA 5AK8A 3P8EA 9JDWA 5HP5A 2Q3UA 4N2AA 4N2MA 2CI5A 4N24A 4N25A 3APNA 1WD8A 5M3QA 2ABRA 3APMA 3I4AA 2C6ZA 4X8GA 4JDWA 1JDXA 1G61A 2EWOA 3BPBA 4N2CA 2JDXA 1BWDA 2CI1A 6JDWA 2ACIA 1H70A 1LXYA 2AAFA 4N2LA 4N2GA 1RXXA 2JERA 4YTBA 3HVMA 2CI7A
chains in the Genus database with same CATH superfamily
4E4JA 4N2BA 4BOFA 3H7KA 4YTGA 1WDAA 2CI4A 2CI6A 4YT9A 3P8PA 1YNHA 8JDWA 4N2DA 2A9GA 4N2HA 1VKPA 1ZBRA 2DEXX 4N2IA 4N2EA 5AN9I 4N28A 4N2FA 4X8CA 1WD9A 3H7CX 2JAJA 4DKTA 1G62A 4N2NA 2JAIA 4N20A 2CMUA 3B1UA 2DEYX 2DEWX 4N26A 4N22A 3B1TA 3I2EA 7JDWA 2CI3A 4N2KA 2DW5A 5AK7A 3JDWA 1JDWA 1XKNA 3RHYA 1S9RA 5JDWA 1YNFA 2JDWA 5AK8A 3P8EA 9JDWA 5HP5A 2Q3UA 4N2AA 4N2MA 2CI5A 4N24A 4N25A 3APNA 1WD8A 5M3QA 2ABRA 3APMA 3I4AA 2C6ZA 4X8GA 4JDWA 1JDXA 1G61A 2EWOA 1YNIA 3BPBA 4N2CA 2JDXA 1BWDA 2CI1A 6JDWA 2ACIA 1H70A 1LXYA 2AAFA 4N2LA 4N2GA 1RXXA 2JERA 4YTBA 3HVMA 2CI7A
chains in the Genus database with same CATH topology
4E4JA 4N2BA 4BOFA 3H7KA 4YTGA 1WDAA 2CI4A 2CI6A 4YT9A 3P8PA 8JDWA 4N2DA 2A9GA 4N2HA 1VKPA 1ZBRA 2DEXX 4N2IA 4N2EA 5AN9I 4N28A 4N2FA 4X8CA 1WD9A 3H7CX 2JAJA 4DKTA 1G62A 4N2NA 2JAIA 4N20A 2CMUA 3B1UA 2DEYX 2DEWX 4N26A 4N22A 3B1TA 3I2EA 7JDWA 2CI3A 4N2KA 2DW5A 5AK7A 3JDWA 1JDWA 1XKNA 3RHYA 1S9RA 5JDWA 2JDWA 5AK8A 3P8EA 9JDWA 5HP5A 2Q3UA 4N2AA 4N2MA 2CI5A 4N24A 4N25A 3APNA 1WD8A 5M3QA 2ABRA 3APMA 3I4AA 2C6ZA 4X8GA 4JDWA 1JDXA 1G61A 2EWOA 3BPBA 4N2CA 2JDXA 1BWDA 2CI1A 6JDWA 2ACIA 1H70A 1LXYA 2AAFA 4N2LA 4N2GA 1RXXA 2JERA 4YTBA 3HVMA 2CI7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4E4J A;  4N2B A;  4BOF A;  3H7K A;  4YTG A;  1WDA A;  2CI4 A;  2CI6 A;  4YT9 A;  3P8P A;  8JDW A;  4N2D A;  2A9G A;  4N2H A;  1VKP A;  1ZBR A;  2DEX X;  4N2I A;  4N2E A;  5AN9 I;  4N28 A;  4N2F A;  4X8C A;  1WD9 A;  3H7C X;  2JAJ A;  4DKT A;  1G62 A;  4N2N A;  2JAI A;  4N20 A;  2CMU A;  3B1U A;  2DEY X;  2DEW X;  4N26 A;  4N22 A;  3B1T A;  3I2E A;  7JDW A;  2CI3 A;  4N2K A;  2DW5 A;  5AK7 A;  3JDW A;  1JDW A;  1XKN A;  3RHY A;  1S9R A;  5JDW A;  2JDW A;  5AK8 A;  3P8E A;  9JDW A;  5HP5 A;  2Q3U A;  4N2A A;  4N2M A;  2CI5 A;  4N24 A;  4N25 A;  3APN A;  1WD8 A;  5M3Q A;  2ABR A;  3APM A;  3I4A A;  2C6Z A;  4X8G A;  4JDW A;  1JDX A;  1G61 A;  2EWO A;  3BPB A;  4N2C A;  2JDX A;  1BWD A;  2CI1 A;  6JDW A;  2ACI A;  1H70 A;  1LXY A;  2AAF A;  4N2L A;  4N2G A;  1RXX A;  2JER A;  4YTB A;  3HVM A;  2CI7 A; 
#chains in the Genus database with same CATH topology
 4E4J A;  4N2B A;  4BOF A;  3H7K A;  4YTG A;  1WDA A;  2CI4 A;  2CI6 A;  4YT9 A;  3P8P A;  1YNH A;  8JDW A;  4N2D A;  2A9G A;  4N2H A;  1VKP A;  1ZBR A;  2DEX X;  4N2I A;  4N2E A;  5AN9 I;  4N28 A;  4N2F A;  4X8C A;  1WD9 A;  3H7C X;  2JAJ A;  4DKT A;  1G62 A;  4N2N A;  2JAI A;  4N20 A;  2CMU A;  3B1U A;  2DEY X;  2DEW X;  4N26 A;  4N22 A;  3B1T A;  3I2E A;  7JDW A;  2CI3 A;  4N2K A;  2DW5 A;  5AK7 A;  3JDW A;  1JDW A;  1XKN A;  3RHY A;  1S9R A;  5JDW A;  1YNF A;  2JDW A;  5AK8 A;  3P8E A;  9JDW A;  5HP5 A;  2Q3U A;  4N2A A;  4N2M A;  2CI5 A;  4N24 A;  4N25 A;  3APN A;  1WD8 A;  5M3Q A;  2ABR A;  3APM A;  3I4A A;  2C6Z A;  4X8G A;  4JDW A;  1JDX A;  1G61 A;  2EWO A;  1YNI A;  3BPB A;  4N2C A;  2JDX A;  1BWD A;  2CI1 A;  6JDW A;  2ACI A;  1H70 A;  1LXY A;  2AAF A;  4N2L A;  4N2G A;  1RXX A;  2JER A;  4YTB A;  3HVM A;  2CI7 A; 
#chains in the Genus database with same CATH homology
 4E4J A;  4N2B A;  4BOF A;  3H7K A;  4YTG A;  1WDA A;  2CI4 A;  2CI6 A;  4YT9 A;  3P8P A;  8JDW A;  4N2D A;  2A9G A;  4N2H A;  1VKP A;  1ZBR A;  2DEX X;  4N2I A;  4N2E A;  5AN9 I;  4N28 A;  4N2F A;  4X8C A;  1WD9 A;  3H7C X;  2JAJ A;  4DKT A;  1G62 A;  4N2N A;  2JAI A;  4N20 A;  2CMU A;  3B1U A;  2DEY X;  2DEW X;  4N26 A;  4N22 A;  3B1T A;  3I2E A;  7JDW A;  2CI3 A;  4N2K A;  2DW5 A;  5AK7 A;  3JDW A;  1JDW A;  1XKN A;  3RHY A;  1S9R A;  5JDW A;  2JDW A;  5AK8 A;  3P8E A;  9JDW A;  5HP5 A;  2Q3U A;  4N2A A;  4N2M A;  2CI5 A;  4N24 A;  4N25 A;  3APN A;  1WD8 A;  5M3Q A;  2ABR A;  3APM A;  3I4A A;  2C6Z A;  4X8G A;  4JDW A;  1JDX A;  1G61 A;  2EWO A;  3BPB A;  4N2C A;  2JDX A;  1BWD A;  2CI1 A;  6JDW A;  2ACI A;  1H70 A;  1LXY A;  2AAF A;  4N2L A;  4N2G A;  1RXX A;  2JER A;  4YTB A;  3HVM A;  2CI7 A; 
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similar chains in the pdb database (?% sequence similarity)

 
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