4IFAA

1.5 angstrom resolution crystal structure of an extracellular protein containing a scp domain from bacillus anthracis str. ames
Total Genus 91
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
91
sequence length
304
structure length
298
Chain Sequence
IVKKKKQVNEDSSDTVLNMIGGDSENLLAKWGEPSRIEPSAYGYEWWVYNQDLAQYVQFGVAERKVVTAYVAGEQVKVPPYYINEKYEDVYKKNPLSHEISLKRGKNSYQFELSDTEVMEQPLVPVEDGWAQLYFDHFTHELVGVRYMDDETLLRQRPYQLVYSGPLTPDKMKQIENGNMQQIFDLTNIIRSRHNLPLLAWDQQTADVAIGHSKDMKDNNYFSHDSPTLGTLGDRLQRGKVGFQLAGENIAAQHSDGVAALQGWLNSEGHRKNLLNEQFTGLGVGVYDKFYTQNFIRK

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYS2 (76-79)S1 (62-63)TI5 (176-179)TI6 (177-180)TIV1 (55-58)AH1 (64-71)S10 (147-152)S9 (139-144)TIV2 (80-83)TVIII2 (90-93)S3 (85-89)S6 (117-118)S4 (97-102)TI2 (93-96)S5 (105-111)TIV3 (101-104)TIV8 (157-161)TIV7 (156-160)TIV6 (154-157)TI3 (113-116)TVIa1 (118-121)AH2 (127-133)S7 (121-122)TII1 (122-125)TVIII3 (137-140)AH5 (249-260)S11 (163-166)TIV10 (166-169)AH6 (278-285)S12 (169-176)S13 (181-187)TVIII4 (269-272)AH3 (190-196)TI8 (272-275)TIV12 (273-276)S16 (291-298)AH4 (219-240)TI7 (214-217)TIV11 (215-219)TIV13 (289-292)S15 (246-247)3H1 (261-264)TVIII1 (74-77)TIV5 (143-146)S14 (200-203)Updating...
connected with : NaN
publication title 1.5 Angstrom resolution crystal structure of an extracellular protein containing a SCP domain from Bacillus anthracis str. Ames
rcsb
molecule keywords Extracellular protein containing a SCP domain
molecule tags Unknown function
source organism Bacillus anthracis
total genus 91
structure length 298
sequence length 304
ec nomenclature
pdb deposition date 2012-12-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00188 CAP Cysteine-rich secretory protein family
A PF14504 CAP_assoc_N CAP-associated N-terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.33.10 Alpha Beta 3-Layer(aba) Sandwich Pathogenesis-related Protein p14a CAP 4ifaA01
1U53A 4NUOA 1SMBA 2VZNA 1XX5A 4NUIA 1WVRA 4P27A 4G2UA 4NUNA 2DDBA 2GIZA 3Q2UA 2EPFA 4IFAA 4H0AA 4TPVA 5JYSA 1RC9A 1QNXA 4D53A 3S6SA 4AIWA 3S6UA 3U3UC 3U3LC 4LY5A 1XTAA 3U3NC 3MZ8A 4NUKA 2DDAA 3NT8A 5ETEA 3S6VA 1CFEA 3Q2RA
chains in the Genus database with same CATH superfamily
1U53A 4NUOA 1SMBA 2VZNA 1XX5A 4NUIA 1WVRA 4P27A 4G2UA 4NUNA 2DDBA 2GIZA 3Q2UA 2EPFA 4IFAA 4H0AA 4TPVA 5JYSA 1RC9A 1QNXA 4D53A 3S6SA 4AIWA 3S6UA 3U3UC 3U3LC 4LY5A 1XTAA 3U3NC 3MZ8A 4NUKA 2DDAA 3NT8A 5ETEA 3S6VA 1CFEA 3Q2RA
chains in the Genus database with same CATH topology
1U53A 4NUOA 1SMBA 2VZNA 1XX5A 4NUIA 1WVRA 4P27A 4G2UA 4NUNA 2DDBA 2GIZA 3Q2UA 2EPFA 4IFAA 4H0AA 4TPVA 5JYSA 1RC9A 1QNXA 4D53A 3S6SA 4AIWA 3S6UA 3U3UC 3U3LC 4LY5A 1XTAA 3U3NC 3MZ8A 4NUKA 2DDAA 3NT8A 5ETEA 3S6VA 1CFEA 3Q2RA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1U53 A;  4NUO A;  1SMB A;  2VZN A;  1XX5 A;  4NUI A;  1WVR A;  4P27 A;  4G2U A;  4NUN A;  2DDB A;  2GIZ A;  3Q2U A;  2EPF A;  4IFA A;  4H0A A;  4TPV A;  5JYS A;  1RC9 A;  1QNX A;  4D53 A;  3S6S A;  4AIW A;  3S6U A;  3U3U C;  3U3L C;  4LY5 A;  1XTA A;  3U3N C;  3MZ8 A;  4NUK A;  2DDA A;  3NT8 A;  5ETE A;  3S6V A;  1CFE A;  3Q2R A; 
#chains in the Genus database with same CATH topology
 1U53 A;  4NUO A;  1SMB A;  2VZN A;  1XX5 A;  4NUI A;  1WVR A;  4P27 A;  4G2U A;  4NUN A;  2DDB A;  2GIZ A;  3Q2U A;  2EPF A;  4IFA A;  4H0A A;  4TPV A;  5JYS A;  1RC9 A;  1QNX A;  4D53 A;  3S6S A;  4AIW A;  3S6U A;  3U3U C;  3U3L C;  4LY5 A;  1XTA A;  3U3N C;  3MZ8 A;  4NUK A;  2DDA A;  3NT8 A;  5ETE A;  3S6V A;  1CFE A;  3Q2R A; 
#chains in the Genus database with same CATH homology
 1U53 A;  4NUO A;  1SMB A;  2VZN A;  1XX5 A;  4NUI A;  1WVR A;  4P27 A;  4G2U A;  4NUN A;  2DDB A;  2GIZ A;  3Q2U A;  2EPF A;  4IFA A;  4H0A A;  4TPV A;  5JYS A;  1RC9 A;  1QNX A;  4D53 A;  3S6S A;  4AIW A;  3S6U A;  3U3U C;  3U3L C;  4LY5 A;  1XTA A;  3U3N C;  3MZ8 A;  4NUK A;  2DDA A;  3NT8 A;  5ETE A;  3S6V A;  1CFE A;  3Q2R A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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