4IFAA

1.5 angstrom resolution crystal structure of an extracellular protein containing a scp domain from bacillus anthracis str. ames
Total Genus 91

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
91
sequence length
304
structure length
298
Chain Sequence
IVKKKKQVNEDSSDTVLNMIGGDSENLLAKWGEPSRIEPSAYGYEWWVYNQDLAQYVQFGVAERKVVTAYVAGEQVKVPPYYINEKYEDVYKKNPLSHEISLKRGKNSYQFELSDTEVMEQPLVPVEDGWAQLYFDHFTHELVGVRYMDDETLLRQRPYQLVYSGPLTPDKMKQIENGNMQQIFDLTNIIRSRHNLPLLAWDQQTADVAIGHSKDMKDNNYFSHDSPTLGTLGDRLQRGKVGFQLAGENIAAQHSDGVAALQGWLNSEGHRKNLLNEQFTGLGVGVYDKFYTQNFIRK

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYS2 (76-79)S1 (62-63)TI5 (176-179)TI6 (177-180)TIV1 (55-58)AH1 (64-71)S10 (147-152)S9 (139-144)TIV2 (80-83)TVIII2 (90-93)S3 (85-89)S6 (117-118)S4 (97-102)TI2 (93-96)S5 (105-111)TIV3 (101-104)TIV8 (157-161)TIV7 (156-160)TIV6 (154-157)TI3 (113-116)TVIa1 (118-121)AH2 (127-133)S7 (121-122)TII1 (122-125)TVIII3 (137-140)AH5 (249-260)S11 (163-166)TIV10 (166-169)AH6 (278-285)S12 (169-176)S13 (181-187)TVIII4 (269-272)AH3 (190-196)TI8 (272-275)TIV12 (273-276)S16 (291-298)AH4 (219-240)TI7 (214-217)TIV11 (215-219)TIV13 (289-292)S15 (246-247)3H1 (261-264)TVIII1 (74-77)TIV5 (143-146)S14 (200-203)Updating...
connected with : NaN
publication title 1.5 Angstrom resolution crystal structure of an extracellular protein containing a SCP domain from Bacillus anthracis str. Ames
rcsb
molecule keywords Extracellular protein containing a SCP domain
molecule tags Unknown function
source organism Bacillus anthracis
total genus 91
structure length 298
sequence length 304
ec nomenclature
pdb deposition date 2012-12-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00188 CAP Cysteine-rich secretory protein family
A PF14504 CAP_assoc_N CAP-associated N-terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.33.10 Alpha Beta 3-Layer(aba) Sandwich Pathogenesis-related Protein p14a CAP 4ifaA01
3S6UA 1XX5A 4LY5A 3S6SA 1RC9A 3MZ8A 5ETEA 2DDAA 1XTAA 4AIWA 1CFEA 4H0AA 2GIZA 1SMBA 4NUOA 4NUKA 4P27A 2EPFA 4IFAA 3Q2UA 3U3LC 4G2UA 2DDBA 3S6VA 3NT8A 4D53A 4TPVA 3Q2RA 3U3NC 2VZNA 4NUIA 3U3UC 1QNXA 4NUNA 1U53A 1WVRA 5JYSA
chains in the Genus database with same CATH superfamily
3S6UA 1XX5A 4LY5A 3S6SA 1RC9A 3MZ8A 5ETEA 2DDAA 1XTAA 4AIWA 1CFEA 4H0AA 2GIZA 1SMBA 4NUOA 4NUKA 4P27A 2EPFA 4IFAA 3Q2UA 3U3LC 4G2UA 2DDBA 3S6VA 3NT8A 4D53A 4TPVA 3Q2RA 3U3NC 2VZNA 4NUIA 3U3UC 1QNXA 4NUNA 1U53A 1WVRA 5JYSA
chains in the Genus database with same CATH topology
3S6UA 1XX5A 4LY5A 3S6SA 1RC9A 3MZ8A 5ETEA 2DDAA 1XTAA 4AIWA 1CFEA 4H0AA 2GIZA 1SMBA 4NUOA 4NUKA 4P27A 2EPFA 4IFAA 3Q2UA 3U3LC 4G2UA 2DDBA 3S6VA 3NT8A 4D53A 4TPVA 3Q2RA 3U3NC 2VZNA 4NUIA 3U3UC 1QNXA 4NUNA 1U53A 1WVRA 5JYSA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3S6U A;  1XX5 A;  4LY5 A;  3S6S A;  1RC9 A;  3MZ8 A;  5ETE A;  2DDA A;  1XTA A;  4AIW A;  1CFE A;  4H0A A;  2GIZ A;  1SMB A;  4NUO A;  4NUK A;  4P27 A;  2EPF A;  4IFA A;  3Q2U A;  3U3L C;  4G2U A;  2DDB A;  3S6V A;  3NT8 A;  4D53 A;  4TPV A;  3Q2R A;  3U3N C;  2VZN A;  4NUI A;  3U3U C;  1QNX A;  4NUN A;  1U53 A;  1WVR A;  5JYS A; 
#chains in the Genus database with same CATH topology
 3S6U A;  1XX5 A;  4LY5 A;  3S6S A;  1RC9 A;  3MZ8 A;  5ETE A;  2DDA A;  1XTA A;  4AIW A;  1CFE A;  4H0A A;  2GIZ A;  1SMB A;  4NUO A;  4NUK A;  4P27 A;  2EPF A;  4IFA A;  3Q2U A;  3U3L C;  4G2U A;  2DDB A;  3S6V A;  3NT8 A;  4D53 A;  4TPV A;  3Q2R A;  3U3N C;  2VZN A;  4NUI A;  3U3U C;  1QNX A;  4NUN A;  1U53 A;  1WVR A;  5JYS A; 
#chains in the Genus database with same CATH homology
 3S6U A;  1XX5 A;  4LY5 A;  3S6S A;  1RC9 A;  3MZ8 A;  5ETE A;  2DDA A;  1XTA A;  4AIW A;  1CFE A;  4H0A A;  2GIZ A;  1SMB A;  4NUO A;  4NUK A;  4P27 A;  2EPF A;  4IFA A;  3Q2U A;  3U3L C;  4G2U A;  2DDB A;  3S6V A;  3NT8 A;  4D53 A;  4TPV A;  3Q2R A;  3U3N C;  2VZN A;  4NUI A;  3U3U C;  1QNX A;  4NUN A;  1U53 A;  1WVR A;  5JYS A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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