4NUNA

Crystal structure of copper-bound na-asp-2
Total Genus 70
20406080100120140160180010203040506070
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
70
sequence length
193
structure length
193
Chain Sequence
KAGCPDNGMSEEARQKFLEMHNSLRSSVALGQAKDGAGGNAPKAAKMKTMAYDCEVEKTAMNNAKQCVFKHSQPNQRKGLGENIFMSSDSGMDKAKAAEQASKAWFGELAEKGVGQNLKLTGGLFSRGVGHYTQMVWQETVKLGCYVEACSNMCYVVCQYGPAGNMMGKDIYEKGEPCSKCENCDKEKGLCSA
2040608010012014016018015010050
010203040506070Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTI1 (52-55)AH5 (146-153)TII1 (94-97)O3 (84-167)TIV1 (23-26)S3 (136-137)O1 (136-138)TIV4 (187-190)AH1 (28-47)O2 (21-71)TI2 (106-109)TIV3 (177-180)AH2 (71-82)TIV2 (61-64)TI3 (154-157)3H1 (91-93)S2 (98-104)AH3 (111-129)AH4 (139-143)S4 (159-167)TI4 (167-170)S5 (170-178)TII2 (183-186)TII3 (193-196)S6 (186-187)Updating...
connected with : NaN
publication title Probing the equatorial groove of the hookworm protein and vaccine candidate antigen, Na-ASP-2.
pubmed doi rcsb
molecule keywords Ancylostoma secreted protein 2
molecule tags Unknown function
source organism Necator americanus
total genus 70
structure length 193
sequence length 193
ec nomenclature
pdb deposition date 2013-12-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00188 CAP Cysteine-rich secretory protein family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.33.10 Alpha Beta 3-Layer(aba) Sandwich Pathogenesis-related Protein p14a CAP 4nunA00
1SMBA 4AIWA 1XTAA 1XX5A 2VZNA 4LY5A 1WVRA 4H0AA 4TPVA 3NT8A 3MZ8A 2EPFA 1CFEA 4IFAA 3U3LC 3S6SA 3S6VA 3S6UA 2GIZA 5JYSA 4G2UA 4NUIA 4NUKA 4D53A 4NUOA 3Q2RA 3Q2UA 5ETEA 1U53A 4NUNA 2DDBA 3U3UC 4P27A 2DDAA 1RC9A 1QNXA 3U3NC
chains in the Genus database with same CATH superfamily
1SMBA 4AIWA 1XTAA 1XX5A 2VZNA 4LY5A 1WVRA 4H0AA 4TPVA 3NT8A 3MZ8A 2EPFA 1CFEA 4IFAA 3U3LC 3S6SA 3S6VA 3S6UA 2GIZA 5JYSA 4G2UA 4NUIA 4NUKA 4D53A 4NUOA 3Q2RA 3Q2UA 5ETEA 1U53A 4NUNA 2DDBA 3U3UC 4P27A 2DDAA 1RC9A 1QNXA 3U3NC
chains in the Genus database with same CATH topology
1SMBA 4AIWA 1XTAA 1XX5A 2VZNA 4LY5A 1WVRA 4H0AA 4TPVA 3NT8A 3MZ8A 2EPFA 1CFEA 4IFAA 3U3LC 3S6SA 3S6VA 3S6UA 2GIZA 5JYSA 4G2UA 4NUIA 4NUKA 4D53A 4NUOA 3Q2RA 3Q2UA 5ETEA 1U53A 4NUNA 2DDBA 3U3UC 4P27A 2DDAA 1RC9A 1QNXA 3U3NC
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1SMB A;  4AIW A;  1XTA A;  1XX5 A;  2VZN A;  4LY5 A;  1WVR A;  4H0A A;  4TPV A;  3NT8 A;  3MZ8 A;  2EPF A;  1CFE A;  4IFA A;  3U3L C;  3S6S A;  3S6V A;  3S6U A;  2GIZ A;  5JYS A;  4G2U A;  4NUI A;  4NUK A;  4D53 A;  4NUO A;  3Q2R A;  3Q2U A;  5ETE A;  1U53 A;  4NUN A;  2DDB A;  3U3U C;  4P27 A;  2DDA A;  1RC9 A;  1QNX A;  3U3N C; 
#chains in the Genus database with same CATH topology
 1SMB A;  4AIW A;  1XTA A;  1XX5 A;  2VZN A;  4LY5 A;  1WVR A;  4H0A A;  4TPV A;  3NT8 A;  3MZ8 A;  2EPF A;  1CFE A;  4IFA A;  3U3L C;  3S6S A;  3S6V A;  3S6U A;  2GIZ A;  5JYS A;  4G2U A;  4NUI A;  4NUK A;  4D53 A;  4NUO A;  3Q2R A;  3Q2U A;  5ETE A;  1U53 A;  4NUN A;  2DDB A;  3U3U C;  4P27 A;  2DDA A;  1RC9 A;  1QNX A;  3U3N C; 
#chains in the Genus database with same CATH homology
 1SMB A;  4AIW A;  1XTA A;  1XX5 A;  2VZN A;  4LY5 A;  1WVR A;  4H0A A;  4TPV A;  3NT8 A;  3MZ8 A;  2EPF A;  1CFE A;  4IFA A;  3U3L C;  3S6S A;  3S6V A;  3S6U A;  2GIZ A;  5JYS A;  4G2U A;  4NUI A;  4NUK A;  4D53 A;  4NUO A;  3Q2R A;  3Q2U A;  5ETE A;  1U53 A;  4NUN A;  2DDB A;  3U3U C;  4P27 A;  2DDA A;  1RC9 A;  1QNX A;  3U3N C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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