4NUOA

Crystal structure of zinc-bound na-asp-2
Total Genus 69
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
69
sequence length
193
structure length
193
Chain Sequence
KAGCPDNGMSEEARQKFLEMHNSLRSSVALGQAKDGAGGNAPKAAKMKTMAYDCEVEKTAMNNAKQCVFKHSQPNQRKGLGENIFMSSDSGMDKAKAAEQASKAWFGELAEKGVGQNLKLTGGLFSRGVGHYTQMVWQETVKLGCYVEACSNMCYVVCQYGPAGNMMGKDIYEKGEPCSKCENCDKEKGLCSA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Unknown function
source organism Necator americanus
publication title Probing the equatorial groove of the hookworm protein and vaccine candidate antigen, Na-ASP-2.
pubmed doi rcsb
molecule keywords Ancylostoma secreted protein 2
total genus 69
structure length 193
sequence length 193
ec nomenclature
pdb deposition date 2013-12-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00188 CAP Cysteine-rich secretory protein family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.33.10 Alpha Beta 3-Layer(aba) Sandwich Pathogenesis-related Protein p14a CAP 4nuoA00
4NUIA 1SMBA 1QNXA 3MZ8A 2DDBA 1XX5A 1U53A 2EPFA 1XTAA 4NUOA 4IFAA 4H0AA 4G2UA 1CFEA 1RC9A 3Q2RA 4P27A 3S6UA 3U3LC 2DDAA 4NUKA 4NUNA 2GIZA 3S6SA 4LY5A 3Q2UA 5ETEA 2VZNA 4D53A 1WVRA 4TPVA 5JYSA 3S6VA 3U3UC 3NT8A 4AIWA 3U3NC
chains in the Genus database with same CATH superfamily
4NUIA 1SMBA 1QNXA 3MZ8A 2DDBA 1XX5A 1U53A 2EPFA 1XTAA 4NUOA 4IFAA 4H0AA 4G2UA 1CFEA 1RC9A 3Q2RA 4P27A 3S6UA 3U3LC 2DDAA 4NUKA 4NUNA 2GIZA 3S6SA 4LY5A 3Q2UA 5ETEA 2VZNA 4D53A 1WVRA 4TPVA 5JYSA 3S6VA 3U3UC 3NT8A 4AIWA 3U3NC
chains in the Genus database with same CATH topology
4NUIA 1SMBA 1QNXA 3MZ8A 2DDBA 1XX5A 1U53A 2EPFA 1XTAA 4NUOA 4IFAA 4H0AA 4G2UA 1CFEA 1RC9A 3Q2RA 4P27A 3S6UA 3U3LC 2DDAA 4NUKA 4NUNA 2GIZA 3S6SA 4LY5A 3Q2UA 5ETEA 2VZNA 4D53A 1WVRA 4TPVA 5JYSA 3S6VA 3U3UC 3NT8A 4AIWA 3U3NC
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4NUI A;  1SMB A;  1QNX A;  3MZ8 A;  2DDB A;  1XX5 A;  1U53 A;  2EPF A;  1XTA A;  4NUO A;  4IFA A;  4H0A A;  4G2U A;  1CFE A;  1RC9 A;  3Q2R A;  4P27 A;  3S6U A;  3U3L C;  2DDA A;  4NUK A;  4NUN A;  2GIZ A;  3S6S A;  4LY5 A;  3Q2U A;  5ETE A;  2VZN A;  4D53 A;  1WVR A;  4TPV A;  5JYS A;  3S6V A;  3U3U C;  3NT8 A;  4AIW A;  3U3N C; 
#chains in the Genus database with same CATH topology
 4NUI A;  1SMB A;  1QNX A;  3MZ8 A;  2DDB A;  1XX5 A;  1U53 A;  2EPF A;  1XTA A;  4NUO A;  4IFA A;  4H0A A;  4G2U A;  1CFE A;  1RC9 A;  3Q2R A;  4P27 A;  3S6U A;  3U3L C;  2DDA A;  4NUK A;  4NUN A;  2GIZ A;  3S6S A;  4LY5 A;  3Q2U A;  5ETE A;  2VZN A;  4D53 A;  1WVR A;  4TPV A;  5JYS A;  3S6V A;  3U3U C;  3NT8 A;  4AIW A;  3U3N C; 
#chains in the Genus database with same CATH homology
 4NUI A;  1SMB A;  1QNX A;  3MZ8 A;  2DDB A;  1XX5 A;  1U53 A;  2EPF A;  1XTA A;  4NUO A;  4IFA A;  4H0A A;  4G2U A;  1CFE A;  1RC9 A;  3Q2R A;  4P27 A;  3S6U A;  3U3L C;  2DDA A;  4NUK A;  4NUN A;  2GIZ A;  3S6S A;  4LY5 A;  3Q2U A;  5ETE A;  2VZN A;  4D53 A;  1WVR A;  4TPV A;  5JYS A;  3S6V A;  3U3U C;  3NT8 A;  4AIW A;  3U3N C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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