The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
53
|
sequence length |
155
|
structure length |
155
|
Chain Sequence |
LSEGQRAIYNFHKKVRKDVKNCRIPGQPPAKNLTKLKWNKLLANKAKQQAKRCKYDSNDPNDFIIGDFESIGQNLADYPTIEGAMKDWLEEYKNYNFEKNQCNGDCKNYKQMVWNTTEEIGCGYEKCGKNYLIVCNYAPGDSEDRPYEAKPESKC
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Schistosoma mansoni venom allergen-like protein 4 (SmVAL4) is a novel lipid-binding SCP/TAPS protein that lacks the prototypical CAP motifs.
pubmed doi rcsb |
| molecule keywords |
Venom allergen-like (VAL) 4 protein
|
| molecule tags |
Allergen
|
| source organism |
Schistosoma mansoni
|
| total genus |
53
|
| structure length |
155
|
| sequence length |
155
|
| ec nomenclature | |
| pdb deposition date | 2014-03-02 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00188 | CAP | Cysteine-rich secretory protein family |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 3-Layer(aba) Sandwich | Pathogenesis-related Protein p14a | CAP |
#chains in the Genus database with same CATH superfamily 4G2U A; 4NUI A; 2VZN A; 2DDA A; 4NUN A; 1SMB A; 4P27 A; 1U53 A; 1XX5 A; 1XTA A; 3U3L C; 5ETE A; 3MZ8 A; 4AIW A; 1QNX A; 2EPF A; 1WVR A; 2GIZ A; 5JYS A; 3S6S A; 3S6V A; 3S6U A; 3U3N C; 1RC9 A; 2DDB A; 4TPV A; 1CFE A; 4NUK A; 3Q2R A; 4NUO A; 4IFA A; 4LY5 A; 4H0A A; 3Q2U A; 4D53 A; 3NT8 A; 3U3U C; #chains in the Genus database with same CATH topology 4G2U A; 4NUI A; 2VZN A; 2DDA A; 4NUN A; 1SMB A; 4P27 A; 1U53 A; 1XX5 A; 1XTA A; 3U3L C; 5ETE A; 3MZ8 A; 4AIW A; 1QNX A; 2EPF A; 1WVR A; 2GIZ A; 5JYS A; 3S6S A; 3S6V A; 3S6U A; 3U3N C; 1RC9 A; 2DDB A; 4TPV A; 1CFE A; 4NUK A; 3Q2R A; 4NUO A; 4IFA A; 4LY5 A; 4H0A A; 3Q2U A; 4D53 A; 3NT8 A; 3U3U C; #chains in the Genus database with same CATH homology 4G2U A; 4NUI A; 2VZN A; 2DDA A; 4NUN A; 1SMB A; 4P27 A; 1U53 A; 1XX5 A; 1XTA A; 3U3L C; 5ETE A; 3MZ8 A; 4AIW A; 1QNX A; 2EPF A; 1WVR A; 2GIZ A; 5JYS A; 3S6S A; 3S6V A; 3S6U A; 3U3N C; 1RC9 A; 2DDB A; 4TPV A; 1CFE A; 4NUK A; 3Q2R A; 4NUO A; 4IFA A; 4LY5 A; 4H0A A; 3Q2U A; 4D53 A; 3NT8 A; 3U3U C;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
