4BOFA

Crystal structure of arginine deiminase from group a streptococcus
Total Genus 142
50100150200250300350400020406080100120140
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
142
sequence length
408
structure length
408
Chain Sequence
QTPIHVYSEIGKLKKVLLHRPGKEIENLMPDYLERLLFDDIPFLEDAQKEHDAFAQALRDEGIEVLYLETLAAESLVTPEIREAFIDEYLSEANIRGRATKKAIRELLMAIEDNQELIEKTMAGVQKSELPEIPASEKGLTDLVESNYPFAIDPMPNLYFTRDPFATIGTGVSLNHMFSETRNRETLYGKYIFTHHPIYGGGKVPMVYDRNETTRIEGGDELVLSKDVLAVGISQRTDAASIEKLLVNIFKQNLGFKKVLAFEFANNRKFMHLDTVFTMVDYDKFTIHPEIEGDLRVYSVTYDNEELHIVEEKGDLAELLAANLGVEKVDLIRCGGDNLVAAGREQWNDGSNTLTIAPGVVVVYNRNTITNAILESKGLKLIKIHGSELVRGRGGPRCMSMPFEREDI
50100150200250300350400400300200100
020406080100120140Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase
source organism Streptococcus pyogenes
publication title Structure-informed design of an enzymatically inactive vaccine component for group A Streptococcus.
pubmed doi rcsb
molecule keywords ARGININE DEIMINASE
total genus 142
structure length 408
sequence length 408
chains with identical sequence B, C, D, E, F, G, H
ec nomenclature ec 3.5.3.6: Arginine deiminase.
pdb deposition date 2013-05-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02274 Amidinotransf Amidinotransferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.3930.10 Mainly Alpha Orthogonal Bundle Pentein Arginine deiminase 4bofA02
3.75.10.10 Alpha Beta 5-stranded Propeller L-arginine/glycine Amidinotransferase; Chain A L-arginine/glycine Amidinotransferase; Chain A 4bofA01
2CI5A 5AN9I 4N26A 4N2GA 1G61A 4N25A 1JDXA 3B1UA 4N28A 8JDWA 3JDWA 1H70A 2A9GA 5M3QA 5JDWA 4N2HA 4N2EA 2AAFA 4JDWA 4X8CA 3H7CX 1ZBRA 2JERA 3APMA 2CI4A 4N22A 2C6ZA 3RHYA 1XKNA 2CI7A 4N2IA 2CMUA 4E4JA 2DEWX 2Q3UA 2CI3A 5AK8A 2DEXX 3APNA 4N2BA 3B1TA 3P8PA 2DEYX 2CI1A 2CI6A 2JDWA 4X8GA 4N2DA 4N24A 4DKTA 2JDXA 4N2LA 1RXXA 3HVMA 4N2MA 6JDWA 1WD8A 4YTGA 5AK7A 1WD9A 2JAJA 1JDWA 3I4AA 4N2CA 2JAIA 3H7KA 2ACIA 2DW5A 1S9RA 1LXYA 4YT9A 4N2AA 5HP5A 7JDWA 3BPBA 4N2NA 4N20A 9JDWA 2ABRA 1BWDA 1G62A 4YTBA 4N2KA 1WDAA 3P8EA 3I2EA 4N2FA 2EWOA 1VKPA 4BOFA
chains in the Genus database with same CATH superfamily
2CI5A 5AN9I 4N26A 4N2GA 1G61A 4N25A 1JDXA 1YNHA 3B1UA 4N28A 8JDWA 3JDWA 1H70A 2A9GA 5M3QA 5JDWA 4N2HA 4N2EA 2AAFA 4JDWA 4X8CA 3H7CX 1ZBRA 2JERA 3APMA 2CI4A 4N22A 2C6ZA 3RHYA 1XKNA 2CI7A 4N2IA 2CMUA 4E4JA 2DEWX 2Q3UA 2CI3A 5AK8A 2DEXX 3APNA 4N2BA 3B1TA 3P8PA 2DEYX 2CI1A 2CI6A 2JDWA 4X8GA 4N2DA 4N24A 4DKTA 2JDXA 4N2LA 1RXXA 3HVMA 4N2MA 6JDWA 1WD8A 4YTGA 1YNIA 5AK7A 1WD9A 2JAJA 1JDWA 3I4AA 4N2CA 2JAIA 3H7KA 2ACIA 2DW5A 1S9RA 1LXYA 4YT9A 1YNFA 4N2AA 5HP5A 7JDWA 3BPBA 4N2NA 4N20A 9JDWA 2ABRA 1BWDA 1G62A 4YTBA 4N2KA 1WDAA 3P8EA 3I2EA 4N2FA 2EWOA 1VKPA 4BOFA
chains in the Genus database with same CATH topology
2CI5A 5AN9I 4N26A 4N2GA 1G61A 4N25A 1JDXA 3B1UA 4N28A 8JDWA 3JDWA 1H70A 2A9GA 5M3QA 5JDWA 4N2HA 4N2EA 2AAFA 4JDWA 4X8CA 3H7CX 1ZBRA 2JERA 3APMA 2CI4A 4N22A 2C6ZA 3RHYA 1XKNA 2CI7A 4N2IA 2CMUA 4E4JA 2DEWX 2Q3UA 2CI3A 5AK8A 2DEXX 3APNA 4N2BA 3B1TA 3P8PA 2DEYX 2CI1A 2CI6A 2JDWA 4X8GA 4N2DA 4N24A 4DKTA 2JDXA 4N2LA 1RXXA 3HVMA 4N2MA 6JDWA 1WD8A 4YTGA 5AK7A 1WD9A 2JAJA 1JDWA 3I4AA 4N2CA 2JAIA 3H7KA 2ACIA 2DW5A 1S9RA 1LXYA 4YT9A 4N2AA 5HP5A 7JDWA 3BPBA 4N2NA 4N20A 9JDWA 2ABRA 1BWDA 1G62A 4YTBA 4N2KA 1WDAA 3P8EA 3I2EA 4N2FA 2EWOA 1VKPA 4BOFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2CI5 A;  5AN9 I;  4N26 A;  4N2G A;  1G61 A;  4N25 A;  1JDX A;  3B1U A;  4N28 A;  8JDW A;  3JDW A;  1H70 A;  2A9G A;  5M3Q A;  5JDW A;  4N2H A;  4N2E A;  2AAF A;  4JDW A;  4X8C A;  3H7C X;  1ZBR A;  2JER A;  3APM A;  2CI4 A;  4N22 A;  2C6Z A;  3RHY A;  1XKN A;  2CI7 A;  4N2I A;  2CMU A;  4E4J A;  2DEW X;  2Q3U A;  2CI3 A;  5AK8 A;  2DEX X;  3APN A;  4N2B A;  3B1T A;  3P8P A;  2DEY X;  2CI1 A;  2CI6 A;  2JDW A;  4X8G A;  4N2D A;  4N24 A;  4DKT A;  2JDX A;  4N2L A;  1RXX A;  3HVM A;  4N2M A;  6JDW A;  1WD8 A;  4YTG A;  5AK7 A;  1WD9 A;  2JAJ A;  1JDW A;  3I4A A;  4N2C A;  2JAI A;  3H7K A;  2ACI A;  2DW5 A;  1S9R A;  1LXY A;  4YT9 A;  4N2A A;  5HP5 A;  7JDW A;  3BPB A;  4N2N A;  4N20 A;  9JDW A;  2ABR A;  1BWD A;  1G62 A;  4YTB A;  4N2K A;  1WDA A;  3P8E A;  3I2E A;  4N2F A;  2EWO A;  1VKP A;  4BOF A; 
#chains in the Genus database with same CATH topology
 2CI5 A;  5AN9 I;  4N26 A;  4N2G A;  1G61 A;  4N25 A;  1JDX A;  1YNH A;  3B1U A;  4N28 A;  8JDW A;  3JDW A;  1H70 A;  2A9G A;  5M3Q A;  5JDW A;  4N2H A;  4N2E A;  2AAF A;  4JDW A;  4X8C A;  3H7C X;  1ZBR A;  2JER A;  3APM A;  2CI4 A;  4N22 A;  2C6Z A;  3RHY A;  1XKN A;  2CI7 A;  4N2I A;  2CMU A;  4E4J A;  2DEW X;  2Q3U A;  2CI3 A;  5AK8 A;  2DEX X;  3APN A;  4N2B A;  3B1T A;  3P8P A;  2DEY X;  2CI1 A;  2CI6 A;  2JDW A;  4X8G A;  4N2D A;  4N24 A;  4DKT A;  2JDX A;  4N2L A;  1RXX A;  3HVM A;  4N2M A;  6JDW A;  1WD8 A;  4YTG A;  1YNI A;  5AK7 A;  1WD9 A;  2JAJ A;  1JDW A;  3I4A A;  4N2C A;  2JAI A;  3H7K A;  2ACI A;  2DW5 A;  1S9R A;  1LXY A;  4YT9 A;  1YNF A;  4N2A A;  5HP5 A;  7JDW A;  3BPB A;  4N2N A;  4N20 A;  9JDW A;  2ABR A;  1BWD A;  1G62 A;  4YTB A;  4N2K A;  1WDA A;  3P8E A;  3I2E A;  4N2F A;  2EWO A;  1VKP A;  4BOF A; 
#chains in the Genus database with same CATH homology
 2CI5 A;  5AN9 I;  4N26 A;  4N2G A;  1G61 A;  4N25 A;  1JDX A;  3B1U A;  4N28 A;  8JDW A;  3JDW A;  1H70 A;  2A9G A;  5M3Q A;  5JDW A;  4N2H A;  4N2E A;  2AAF A;  4JDW A;  4X8C A;  3H7C X;  1ZBR A;  2JER A;  3APM A;  2CI4 A;  4N22 A;  2C6Z A;  3RHY A;  1XKN A;  2CI7 A;  4N2I A;  2CMU A;  4E4J A;  2DEW X;  2Q3U A;  2CI3 A;  5AK8 A;  2DEX X;  3APN A;  4N2B A;  3B1T A;  3P8P A;  2DEY X;  2CI1 A;  2CI6 A;  2JDW A;  4X8G A;  4N2D A;  4N24 A;  4DKT A;  2JDX A;  4N2L A;  1RXX A;  3HVM A;  4N2M A;  6JDW A;  1WD8 A;  4YTG A;  5AK7 A;  1WD9 A;  2JAJ A;  1JDW A;  3I4A A;  4N2C A;  2JAI A;  3H7K A;  2ACI A;  2DW5 A;  1S9R A;  1LXY A;  4YT9 A;  4N2A A;  5HP5 A;  7JDW A;  3BPB A;  4N2N A;  4N20 A;  9JDW A;  2ABR A;  1BWD A;  1G62 A;  4YTB A;  4N2K A;  1WDA A;  3P8E A;  3I2E A;  4N2F A;  2EWO A;  1VKP A;  4BOF A; 
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similar chains in the pdb database (?% sequence similarity)

 
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