The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
142
|
sequence length |
408
|
structure length |
408
|
Chain Sequence |
QTPIHVYSEIGKLKKVLLHRPGKEIENLMPDYLERLLFDDIPFLEDAQKEHDAFAQALRDEGIEVLYLETLAAESLVTPEIREAFIDEYLSEANIRGRATKKAIRELLMAIEDNQELIEKTMAGVQKSELPEIPASEKGLTDLVESNYPFAIDPMPNLYFTRDPFATIGTGVSLNHMFSETRNRETLYGKYIFTHHPIYGGGKVPMVYDRNETTRIEGGDELVLSKDVLAVGISQRTDAASIEKLLVNIFKQNLGFKKVLAFEFANNRKFMHLDTVFTMVDYDKFTIHPEIEGDLRVYSVTYDNEELHIVEEKGDLAELLAANLGVEKVDLIRCGGDNLVAAGREQWNDGSNTLTIAPGVVVVYNRNTITNAILESKGLKLIKIHGSELVRGRGGPRCMSMPFEREDI
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Structure-informed design of an enzymatically inactive vaccine component for group A Streptococcus.
pubmed doi rcsb |
| molecule keywords |
ARGININE DEIMINASE
|
| molecule tags |
Hydrolase
|
| source organism |
Streptococcus pyogenes
|
| total genus |
142
|
| structure length |
408
|
| sequence length |
408
|
| chains with identical sequence |
B, C, D, E, F, G, H
|
| ec nomenclature |
ec
3.5.3.6: Arginine deiminase. |
| pdb deposition date | 2013-05-20 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF02274 | Amidinotransf | Amidinotransferase |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Orthogonal Bundle | Pentein | Arginine deiminase | ||
| Alpha Beta | 5-stranded Propeller | L-arginine/glycine Amidinotransferase; Chain A | L-arginine/glycine Amidinotransferase; Chain A |
#chains in the Genus database with same CATH superfamily 2AAF A; 1RXX A; 1WD9 A; 3APN A; 4N2I A; 8JDW A; 1VKP A; 2DEX X; 1H70 A; 2CMU A; 3H7K A; 3H7C X; 4X8C A; 2CI7 A; 1BWD A; 4X8G A; 4N2A A; 1ZBR A; 4JDW A; 3APM A; 4N2L A; 3B1U A; 2CI6 A; 3P8E A; 2Q3U A; 1G61 A; 4N26 A; 4N2D A; 4N2M A; 4DKT A; 4BOF A; 2JAI A; 2JAJ A; 4N22 A; 3RHY A; 3P8P A; 3BPB A; 7JDW A; 3B1T A; 5HP5 A; 4N2K A; 2JDX A; 5AK8 A; 1JDW A; 1S9R A; 2A9G A; 4N2N A; 3HVM A; 4N2B A; 1LXY A; 4YT9 A; 4N2G A; 2DEW X; 3I2E A; 5AN9 I; 1JDX A; 2CI3 A; 2ACI A; 4E4J A; 4YTB A; 1XKN A; 4N28 A; 3JDW A; 2C6Z A; 4N2E A; 2CI1 A; 2DW5 A; 2DEY X; 2JER A; 2CI5 A; 3I4A A; 4N2H A; 1WDA A; 4N2F A; 4N2C A; 5JDW A; 2JDW A; 4YTG A; 9JDW A; 2EWO A; 2ABR A; 6JDW A; 1G62 A; 4N24 A; 5AK7 A; 1WD8 A; 4N25 A; 4N20 A; 2CI4 A; 5M3Q A; #chains in the Genus database with same CATH topology 2AAF A; 1RXX A; 1WD9 A; 3APN A; 4N2I A; 8JDW A; 1VKP A; 2DEX X; 1H70 A; 2CMU A; 3H7K A; 3H7C X; 4X8C A; 2CI7 A; 1BWD A; 4X8G A; 4N2A A; 1ZBR A; 4JDW A; 3APM A; 4N2L A; 3B1U A; 2CI6 A; 3P8E A; 2Q3U A; 1G61 A; 4N26 A; 4N2D A; 4N2M A; 4DKT A; 4BOF A; 2JAI A; 2JAJ A; 4N22 A; 3RHY A; 3P8P A; 3BPB A; 7JDW A; 3B1T A; 5HP5 A; 4N2K A; 2JDX A; 5AK8 A; 1JDW A; 1S9R A; 2A9G A; 4N2N A; 3HVM A; 4N2B A; 1LXY A; 4YT9 A; 1YNF A; 4N2G A; 2DEW X; 3I2E A; 5AN9 I; 1JDX A; 2CI3 A; 1YNH A; 2ACI A; 4E4J A; 4YTB A; 1XKN A; 4N28 A; 3JDW A; 2C6Z A; 4N2E A; 2CI1 A; 2DW5 A; 2DEY X; 2JER A; 2CI5 A; 3I4A A; 4N2H A; 1WDA A; 1YNI A; 4N2F A; 4N2C A; 5JDW A; 2JDW A; 4YTG A; 9JDW A; 2EWO A; 2ABR A; 6JDW A; 1G62 A; 4N24 A; 5AK7 A; 1WD8 A; 4N25 A; 4N20 A; 2CI4 A; 5M3Q A; #chains in the Genus database with same CATH homology 2AAF A; 1RXX A; 1WD9 A; 3APN A; 4N2I A; 8JDW A; 1VKP A; 2DEX X; 1H70 A; 2CMU A; 3H7K A; 3H7C X; 4X8C A; 2CI7 A; 1BWD A; 4X8G A; 4N2A A; 1ZBR A; 4JDW A; 3APM A; 4N2L A; 3B1U A; 2CI6 A; 3P8E A; 2Q3U A; 1G61 A; 4N26 A; 4N2D A; 4N2M A; 4DKT A; 4BOF A; 2JAI A; 2JAJ A; 4N22 A; 3RHY A; 3P8P A; 3BPB A; 7JDW A; 3B1T A; 5HP5 A; 4N2K A; 2JDX A; 5AK8 A; 1JDW A; 1S9R A; 2A9G A; 4N2N A; 3HVM A; 4N2B A; 1LXY A; 4YT9 A; 4N2G A; 2DEW X; 3I2E A; 5AN9 I; 1JDX A; 2CI3 A; 2ACI A; 4E4J A; 4YTB A; 1XKN A; 4N28 A; 3JDW A; 2C6Z A; 4N2E A; 2CI1 A; 2DW5 A; 2DEY X; 2JER A; 2CI5 A; 3I4A A; 4N2H A; 1WDA A; 4N2F A; 4N2C A; 5JDW A; 2JDW A; 4YTG A; 9JDW A; 2EWO A; 2ABR A; 6JDW A; 1G62 A; 4N24 A; 5AK7 A; 1WD8 A; 4N25 A; 4N20 A; 2CI4 A; 5M3Q A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
