The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
73
|
sequence length |
224
|
structure length |
224
|
Chain Sequence |
AVRAQFENSNEVGVFATLTNSYCLVALGASENFYSVFEAELQDVIPICRTTIAGTRIIGRLTAGNRKGLLVPTTTTDQELQHLRNSLPDDIRIQRIEERLSALGNVIVCNDHTALIHPDLERETEEIIADVLGVEVFRQTIADHVLVGSYMALSNQGGLVHPKTSIQDQDELSSLLGVPLVAGSVNRGSNVIGGGMVVNDWLAVTGLDTTAPELSVIESVFRLG
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Interaction network of the ribosome assembly machinery from a eukaryotic thermophile.
pubmed doi rcsb |
| molecule keywords |
Eukaryotic translation initiation factor 6
|
| molecule tags |
Ribosome
|
| source organism |
Chaetomium thermophilum (strain dsm 1495 / cbs 144.50 / imi 039719)
|
| total genus |
73
|
| structure length |
224
|
| sequence length |
224
|
| ec nomenclature | |
| pdb deposition date | 2016-10-17 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF01912 | eIF-6 | eIF-6 family |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 5-stranded Propeller | L-arginine/glycine Amidinotransferase; Chain A | L-arginine/glycine Amidinotransferase; Chain A |
#chains in the Genus database with same CATH superfamily 4E4J A; 3H7C X; 4N24 A; 2CMU A; 1LXY A; 4N2B A; 2CI5 A; 3B1U A; 2EWO A; 2C6Z A; 2CI7 A; 4N2G A; 2CI4 A; 4YTB A; 4N20 A; 3P8P A; 3H7K A; 3P8E A; 2JDX A; 4N2D A; 3I4A A; 4N2L A; 4N26 A; 4N2E A; 1WDA A; 4N2K A; 2DEY X; 1S9R A; 4X8C A; 4X8G A; 1WD8 A; 2DEW X; 5HP5 A; 2DEX X; 2ACI A; 1JDW A; 6JDW A; 4YT9 A; 4N2H A; 2DW5 A; 4N2M A; 3HVM A; 4N2I A; 3JDW A; 1H70 A; 1VKP A; 2AAF A; 5M3Q A; 5AN9 I; 3I2E A; 5JDW A; 2Q3U A; 4N2F A; 3RHY A; 4N22 A; 2CI1 A; 2JAJ A; 3APM A; 4JDW A; 4BOF A; 4DKT A; 9JDW A; 4N2A A; 4YTG A; 1ZBR A; 3B1T A; 2JAI A; 1JDX A; 2CI3 A; 3APN A; 4N2C A; 2ABR A; 5AK7 A; 1RXX A; 1G61 A; 1BWD A; 7JDW A; 1WD9 A; 1G62 A; 4N2N A; 5AK8 A; 4N28 A; 2CI6 A; 8JDW A; 2JER A; 1XKN A; 2JDW A; 2A9G A; 3BPB A; 4N25 A; #chains in the Genus database with same CATH topology 4E4J A; 3H7C X; 4N24 A; 2CMU A; 1LXY A; 4N2B A; 2CI5 A; 3B1U A; 2EWO A; 2C6Z A; 2CI7 A; 4N2G A; 2CI4 A; 4YTB A; 4N20 A; 3P8P A; 3H7K A; 3P8E A; 2JDX A; 4N2D A; 3I4A A; 4N2L A; 4N26 A; 4N2E A; 1WDA A; 4N2K A; 2DEY X; 1S9R A; 4X8C A; 4X8G A; 1WD8 A; 2DEW X; 5HP5 A; 2DEX X; 2ACI A; 1JDW A; 6JDW A; 4YT9 A; 4N2H A; 2DW5 A; 4N2M A; 3HVM A; 4N2I A; 3JDW A; 1H70 A; 1VKP A; 2AAF A; 1YNI A; 5M3Q A; 5AN9 I; 3I2E A; 5JDW A; 2Q3U A; 4N2F A; 3RHY A; 1YNF A; 4N22 A; 2CI1 A; 2JAJ A; 3APM A; 4JDW A; 4BOF A; 4DKT A; 9JDW A; 4N2A A; 4YTG A; 1ZBR A; 3B1T A; 2JAI A; 1JDX A; 2CI3 A; 3APN A; 4N2C A; 2ABR A; 5AK7 A; 1YNH A; 1RXX A; 1G61 A; 1BWD A; 7JDW A; 1WD9 A; 1G62 A; 4N2N A; 5AK8 A; 4N28 A; 2CI6 A; 8JDW A; 2JER A; 1XKN A; 2JDW A; 2A9G A; 3BPB A; 4N25 A; #chains in the Genus database with same CATH homology 4E4J A; 3H7C X; 4N24 A; 2CMU A; 1LXY A; 4N2B A; 2CI5 A; 3B1U A; 2EWO A; 2C6Z A; 2CI7 A; 4N2G A; 2CI4 A; 4YTB A; 4N20 A; 3P8P A; 3H7K A; 3P8E A; 2JDX A; 4N2D A; 3I4A A; 4N2L A; 4N26 A; 4N2E A; 1WDA A; 4N2K A; 2DEY X; 1S9R A; 4X8C A; 4X8G A; 1WD8 A; 2DEW X; 5HP5 A; 2DEX X; 2ACI A; 1JDW A; 6JDW A; 4YT9 A; 4N2H A; 2DW5 A; 4N2M A; 3HVM A; 4N2I A; 3JDW A; 1H70 A; 1VKP A; 2AAF A; 5M3Q A; 5AN9 I; 3I2E A; 5JDW A; 2Q3U A; 4N2F A; 3RHY A; 4N22 A; 2CI1 A; 2JAJ A; 3APM A; 4JDW A; 4BOF A; 4DKT A; 9JDW A; 4N2A A; 4YTG A; 1ZBR A; 3B1T A; 2JAI A; 1JDX A; 2CI3 A; 3APN A; 4N2C A; 2ABR A; 5AK7 A; 1RXX A; 1G61 A; 1BWD A; 7JDW A; 1WD9 A; 1G62 A; 4N2N A; 5AK8 A; 4N28 A; 2CI6 A; 8JDW A; 2JER A; 1XKN A; 2JDW A; 2A9G A; 3BPB A; 4N25 A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
