5JDWA

Crystal structure of human l-arginine:glycine amidinotransferase in complex with glycine
Total Genus 119
50100150200250300350020406080100120
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
119
sequence length
360
structure length
360
Chain Sequence
CPVSSYNEWDPLEEVIVGRAENACVPPFTIEVKANTYEKYWPFYQKQGGHYFPKDHLKKAVAEIEEMCNILKTEGVTVRRPDPIDWSLKYKTPDFESTGLYSAMPRDILIVVGNEIIEAPMAWRSRFFEYRAYRSIIKDYFHRGAKWTTAPKPTMADELYNQDYPIHSVEDRHKLAAQGKFVTTEFEPCFDAADFIRAGRDIFAQRSQVTNYLGIEWMRRHLAPDYRVHIISFKDPNPMHIDATFNIIGPGIVLSNPDRPCHQIDLFKKAGWTIITPPTPIIPDDHPLWMSSKWLSMNVLMLDEKRVMVDANEVPIQKMFEKLGITTIKVNIRNANSLGGGFHCWTCDVRRRGTLQSYLD
5010015020025030035035030025020015010050
020406080100Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTVIII2 (300-303)3H1 (101-103)TVIa1 (285-288)TI7 (304-307)S2 (87-88)TII1 (83-86)AH1 (93-97)3H4 (192-195)AH2 (104-110)TII2 (110-113)TI1 (148-151)AH3 (117-137)TI3 (189-192)S6 (158-161)S5 (152-155)TI2 (155-158)3H2 (168-170)S7 (172-175)S8 (178-181)TII'1 (175-178)S9 (209-212)AH5 (232-241)AH4 (196-206)TI9 (346-349)3H5 (220-222)TI4 (224-227)3H6 (255-257)AH6 (275-285)S10 (258-261)S12 (290-293)S11 (264-267)TII'2 (261-264)3H7 (356-360)TI5 (270-273)TII3 (312-315)S15 (336-338)TI6 (286-289)TIV2 (296-299)S13 (308-312)TIV6 (351-354)TI8 (319-322)TIV5 (320-323)AH7 (326-333)S3 (113-114)S1 (75-80)TIV1 (70-73)O1 (90-92)S4 (140-142)3H3 (187-189)TVIII1 (165-168)S14 (315-318)O2 (227-229)Updating...
connected with : NaN
molecule tags Transferase
source organism Homo sapiens
publication title The ligand-induced structural changes of human L-Arginine:Glycine amidinotransferase. A mutational and crystallographic study.
pubmed doi rcsb
molecule keywords PROTEIN (L-ARGININE:GLYCINE AMIDINOTRANSFERASE)
total genus 119
structure length 360
sequence length 360
ec nomenclature ec 2.1.4.1: Glycine amidinotransferase.
pdb deposition date 1998-10-07
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.75.10.10 Alpha Beta 5-stranded Propeller L-arginine/glycine Amidinotransferase; Chain A L-arginine/glycine Amidinotransferase; Chain A 5jdwA00
1XKNA 6JDWA 2JAIA 4N2FA 3H7CX 1WD8A 4N2MA 2DEWX 2AAFA 1G62A 4N24A 9JDWA 2JDWA 3APNA 3I2EA 4BOFA 4N20A 2CI7A 5AK7A 4N2KA 3P8EA 4YTGA 4X8GA 4DKTA 8JDWA 4N2IA 2CI6A 4N22A 5JDWA 4N2AA 4E4JA 1H70A 5AN9I 1ZBRA 4N26A 4N2GA 3I4AA 4N2DA 7JDWA 2DW5A 1JDXA 3BPBA 1VKPA 3B1TA 1S9RA 2ABRA 3RHYA 5HP5A 5M3QA 1WDAA 2JERA 4X8CA 5AK8A 2JAJA 1RXXA 2DEXX 4N2BA 1WD9A 1LXYA 2CMUA 2JDXA 3JDWA 2CI5A 4N2CA 4N2HA 4YTBA 4N28A 1G61A 3B1UA 1BWDA 2A9GA 2Q3UA 4JDWA 1JDWA 4YT9A 2ACIA 4N2EA 3P8PA 2EWOA 4N25A 2CI4A 4N2LA 3HVMA 3APMA 2CI1A 2C6ZA 2CI3A 3H7KA 2DEYX 4N2NA
chains in the Genus database with same CATH superfamily
1XKNA 6JDWA 2JAIA 4N2FA 3H7CX 1WD8A 4N2MA 1YNHA 2DEWX 2AAFA 1G62A 4N24A 9JDWA 2JDWA 3APNA 3I2EA 4BOFA 4N20A 1YNFA 2CI7A 5AK7A 4N2KA 3P8EA 4YTGA 4X8GA 4DKTA 8JDWA 4N2IA 2CI6A 4N22A 5JDWA 4N2AA 4E4JA 1H70A 5AN9I 1ZBRA 4N26A 4N2GA 3I4AA 4N2DA 7JDWA 2DW5A 1JDXA 3BPBA 1VKPA 3B1TA 1S9RA 2ABRA 3RHYA 1YNIA 5HP5A 5M3QA 1WDAA 2JERA 4X8CA 5AK8A 2JAJA 1RXXA 2DEXX 4N2BA 1WD9A 1LXYA 2CMUA 2JDXA 3JDWA 2CI5A 4N2CA 4N2HA 4YTBA 4N28A 1G61A 3B1UA 1BWDA 2A9GA 2Q3UA 4JDWA 1JDWA 4YT9A 2ACIA 4N2EA 3P8PA 2EWOA 4N25A 2CI4A 4N2LA 3HVMA 3APMA 2CI1A 2C6ZA 2CI3A 3H7KA 2DEYX 4N2NA
chains in the Genus database with same CATH topology
1XKNA 6JDWA 2JAIA 4N2FA 3H7CX 1WD8A 4N2MA 2DEWX 2AAFA 1G62A 4N24A 9JDWA 2JDWA 3APNA 3I2EA 4BOFA 4N20A 2CI7A 5AK7A 4N2KA 3P8EA 4YTGA 4X8GA 4DKTA 8JDWA 4N2IA 2CI6A 4N22A 5JDWA 4N2AA 4E4JA 1H70A 5AN9I 1ZBRA 4N26A 4N2GA 3I4AA 4N2DA 7JDWA 2DW5A 1JDXA 3BPBA 1VKPA 3B1TA 1S9RA 2ABRA 3RHYA 5HP5A 5M3QA 1WDAA 2JERA 4X8CA 5AK8A 2JAJA 1RXXA 2DEXX 4N2BA 1WD9A 1LXYA 2CMUA 2JDXA 3JDWA 2CI5A 4N2CA 4N2HA 4YTBA 4N28A 1G61A 3B1UA 1BWDA 2A9GA 2Q3UA 4JDWA 1JDWA 4YT9A 2ACIA 4N2EA 3P8PA 2EWOA 4N25A 2CI4A 4N2LA 3HVMA 3APMA 2CI1A 2C6ZA 2CI3A 3H7KA 2DEYX 4N2NA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1XKN A;  6JDW A;  2JAI A;  4N2F A;  3H7C X;  1WD8 A;  4N2M A;  2DEW X;  2AAF A;  1G62 A;  4N24 A;  9JDW A;  2JDW A;  3APN A;  3I2E A;  4BOF A;  4N20 A;  2CI7 A;  5AK7 A;  4N2K A;  3P8E A;  4YTG A;  4X8G A;  4DKT A;  8JDW A;  4N2I A;  2CI6 A;  4N22 A;  5JDW A;  4N2A A;  4E4J A;  1H70 A;  5AN9 I;  1ZBR A;  4N26 A;  4N2G A;  3I4A A;  4N2D A;  7JDW A;  2DW5 A;  1JDX A;  3BPB A;  1VKP A;  3B1T A;  1S9R A;  2ABR A;  3RHY A;  5HP5 A;  5M3Q A;  1WDA A;  2JER A;  4X8C A;  5AK8 A;  2JAJ A;  1RXX A;  2DEX X;  4N2B A;  1WD9 A;  1LXY A;  2CMU A;  2JDX A;  3JDW A;  2CI5 A;  4N2C A;  4N2H A;  4YTB A;  4N28 A;  1G61 A;  3B1U A;  1BWD A;  2A9G A;  2Q3U A;  4JDW A;  1JDW A;  4YT9 A;  2ACI A;  4N2E A;  3P8P A;  2EWO A;  4N25 A;  2CI4 A;  4N2L A;  3HVM A;  3APM A;  2CI1 A;  2C6Z A;  2CI3 A;  3H7K A;  2DEY X;  4N2N A; 
#chains in the Genus database with same CATH topology
 1XKN A;  6JDW A;  2JAI A;  4N2F A;  3H7C X;  1WD8 A;  4N2M A;  1YNH A;  2DEW X;  2AAF A;  1G62 A;  4N24 A;  9JDW A;  2JDW A;  3APN A;  3I2E A;  4BOF A;  4N20 A;  1YNF A;  2CI7 A;  5AK7 A;  4N2K A;  3P8E A;  4YTG A;  4X8G A;  4DKT A;  8JDW A;  4N2I A;  2CI6 A;  4N22 A;  5JDW A;  4N2A A;  4E4J A;  1H70 A;  5AN9 I;  1ZBR A;  4N26 A;  4N2G A;  3I4A A;  4N2D A;  7JDW A;  2DW5 A;  1JDX A;  3BPB A;  1VKP A;  3B1T A;  1S9R A;  2ABR A;  3RHY A;  1YNI A;  5HP5 A;  5M3Q A;  1WDA A;  2JER A;  4X8C A;  5AK8 A;  2JAJ A;  1RXX A;  2DEX X;  4N2B A;  1WD9 A;  1LXY A;  2CMU A;  2JDX A;  3JDW A;  2CI5 A;  4N2C A;  4N2H A;  4YTB A;  4N28 A;  1G61 A;  3B1U A;  1BWD A;  2A9G A;  2Q3U A;  4JDW A;  1JDW A;  4YT9 A;  2ACI A;  4N2E A;  3P8P A;  2EWO A;  4N25 A;  2CI4 A;  4N2L A;  3HVM A;  3APM A;  2CI1 A;  2C6Z A;  2CI3 A;  3H7K A;  2DEY X;  4N2N A; 
#chains in the Genus database with same CATH homology
 1XKN A;  6JDW A;  2JAI A;  4N2F A;  3H7C X;  1WD8 A;  4N2M A;  2DEW X;  2AAF A;  1G62 A;  4N24 A;  9JDW A;  2JDW A;  3APN A;  3I2E A;  4BOF A;  4N20 A;  2CI7 A;  5AK7 A;  4N2K A;  3P8E A;  4YTG A;  4X8G A;  4DKT A;  8JDW A;  4N2I A;  2CI6 A;  4N22 A;  5JDW A;  4N2A A;  4E4J A;  1H70 A;  5AN9 I;  1ZBR A;  4N26 A;  4N2G A;  3I4A A;  4N2D A;  7JDW A;  2DW5 A;  1JDX A;  3BPB A;  1VKP A;  3B1T A;  1S9R A;  2ABR A;  3RHY A;  5HP5 A;  5M3Q A;  1WDA A;  2JER A;  4X8C A;  5AK8 A;  2JAJ A;  1RXX A;  2DEX X;  4N2B A;  1WD9 A;  1LXY A;  2CMU A;  2JDX A;  3JDW A;  2CI5 A;  4N2C A;  4N2H A;  4YTB A;  4N28 A;  1G61 A;  3B1U A;  1BWD A;  2A9G A;  2Q3U A;  4JDW A;  1JDW A;  4YT9 A;  2ACI A;  4N2E A;  3P8P A;  2EWO A;  4N25 A;  2CI4 A;  4N2L A;  3HVM A;  3APM A;  2CI1 A;  2C6Z A;  2CI3 A;  3H7K A;  2DEY X;  4N2N A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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