9JDWA

Crystal structure of human l-arginine:glycine amidinotransferase in complex with alpha-amino butyric acid
Total Genus 125
50100150200250300350020406080100120
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
125
sequence length
360
structure length
360
Chain Sequence
CPVSSYNEWDPLEEVIVGRAENACVPPFTIEVKANTYEKYWPFYQKQGGHYFPKDHLKKAVAEIEEMCNILKTEGVTVRRPDPIDWSLKYKTPDFESTGLYSAMPRDILIVVGNEIIEAPMAWRSRFFEYRAYRSIIKDYFHRGAKWTTAPKPTMADELYNQDYPIHSVEDRHKLAAQGKFVTTEFEPCFDAADFIRAGRDIFAQRSQVTNYLGIEWMRRHLAPDYRVHIISFKDPNPMHIDATFNIIGPGIVLSNPDRPCHQIDLFKKAGWTIITPPTPIIPDDHPLWMSSKWLSMNVLMLDEKRVMVDANEVPIQKMFEKLGITTIKVNIRNANSLGGGFHCWTCDVRRRGTLQSYLD
5010015020025030035035030025020015010050
020406080100120Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
3H1 (101-103)EMPTYTVIa1 (285-288)S1 (75-80)TVIII1 (64-67)S2 (87-88)TII1 (83-86)AH3 (117-137)O1 (90-92)AH1 (93-98)3H4 (192-195)AH2 (104-110)TII2 (110-113)TI1 (148-151)TI3 (189-192)S5 (152-155)TI2 (155-158)3H2 (168-170)S7 (172-175)TII'1 (175-178)AH5 (234-241)S8 (178-181)AH4 (196-206)TI9 (346-349)TI11 (355-358)S9 (209-212)3H5 (220-222)TI4 (224-227)S10 (258-261)3H6 (255-257)TVIII3 (244-247)TI6 (270-273)TIV2 (248-251)AH6 (275-285)S12 (290-293)S11 (264-267)TII'2 (261-264)3H7 (358-360)TII3 (312-315)S13 (308-312)TIV3 (298-301)TI10 (351-354)AH7 (326-333)S15 (336-338)TIV1 (70-73)S4 (140-142)3H3 (187-189)S6 (158-161)TVIII2 (165-168)S14 (315-318)TI8 (319-322)TIV7 (320-323)S3 (113-114)TIV4 (304-307)TI5 (228-231)Updating...
connected with : NaN
molecule tags Transferase
source organism Homo sapiens
publication title The ligand-induced structural changes of human L-Arginine:Glycine amidinotransferase. A mutational and crystallographic study.
pubmed doi rcsb
molecule keywords PROTEIN (L-ARGININE:GLYCINE AMIDINOTRANSFERASE)
total genus 125
structure length 360
sequence length 360
ec nomenclature ec 2.1.4.1: Glycine amidinotransferase.
pdb deposition date 1998-10-12
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.75.10.10 Alpha Beta 5-stranded Propeller L-arginine/glycine Amidinotransferase; Chain A L-arginine/glycine Amidinotransferase; Chain A 9jdwA00
2ACIA 1ZBRA 4N24A 2CI1A 2CI4A 2AAFA 1JDXA 3H7KA 5AN9I 3HVMA 4JDWA 4N2FA 2DEWX 3APNA 4N2IA 1WDAA 3B1UA 9JDWA 8JDWA 1S9RA 2DW5A 2JDXA 2Q3UA 4N25A 4N20A 4YT9A 4N2EA 3BPBA 1VKPA 4X8GA 5M3QA 2CI6A 4N2MA 4BOFA 3I4AA 3B1TA 1H70A 4N2AA 4YTGA 2JDWA 2A9GA 6JDWA 4YTBA 3P8EA 3RHYA 1XKNA 1WD9A 4X8CA 5HP5A 2CMUA 1RXXA 2CI5A 1JDWA 4N2DA 2JAIA 1LXYA 2EWOA 4N2LA 4N2BA 4N2KA 5AK8A 5JDWA 2C6ZA 2DEXX 4N2GA 4DKTA 1BWDA 1WD8A 2CI7A 2DEYX 3I2EA 4E4JA 2JERA 3P8PA 1G62A 3APMA 2JAJA 5AK7A 2ABRA 3JDWA 2CI3A 4N2HA 4N28A 1G61A 4N26A 4N2CA 4N2NA 7JDWA 3H7CX 4N22A
chains in the Genus database with same CATH superfamily
2ACIA 1ZBRA 4N24A 2CI1A 2CI4A 2AAFA 1JDXA 3H7KA 5AN9I 3HVMA 4JDWA 4N2FA 2DEWX 3APNA 4N2IA 1YNIA 1WDAA 3B1UA 9JDWA 8JDWA 1S9RA 2DW5A 2JDXA 2Q3UA 4N25A 4N20A 4YT9A 4N2EA 3BPBA 1VKPA 4X8GA 5M3QA 2CI6A 4N2MA 4BOFA 3I4AA 3B1TA 1H70A 4N2AA 4YTGA 2JDWA 2A9GA 6JDWA 4YTBA 3P8EA 3RHYA 1XKNA 1WD9A 4X8CA 5HP5A 2CMUA 1RXXA 2CI5A 1JDWA 4N2DA 2JAIA 1LXYA 2EWOA 1YNFA 4N2LA 4N2BA 4N2KA 5AK8A 5JDWA 2C6ZA 2DEXX 4N2GA 4DKTA 1BWDA 1WD8A 2CI7A 2DEYX 3I2EA 4E4JA 2JERA 3P8PA 1G62A 3APMA 2JAJA 5AK7A 2ABRA 3JDWA 2CI3A 4N2HA 4N28A 1G61A 4N26A 4N2CA 4N2NA 1YNHA 7JDWA 3H7CX 4N22A
chains in the Genus database with same CATH topology
2ACIA 1ZBRA 4N24A 2CI1A 2CI4A 2AAFA 1JDXA 3H7KA 5AN9I 3HVMA 4JDWA 4N2FA 2DEWX 3APNA 4N2IA 1WDAA 3B1UA 9JDWA 8JDWA 1S9RA 2DW5A 2JDXA 2Q3UA 4N25A 4N20A 4YT9A 4N2EA 3BPBA 1VKPA 4X8GA 5M3QA 2CI6A 4N2MA 4BOFA 3I4AA 3B1TA 1H70A 4N2AA 4YTGA 2JDWA 2A9GA 6JDWA 4YTBA 3P8EA 3RHYA 1XKNA 1WD9A 4X8CA 5HP5A 2CMUA 1RXXA 2CI5A 1JDWA 4N2DA 2JAIA 1LXYA 2EWOA 4N2LA 4N2BA 4N2KA 5AK8A 5JDWA 2C6ZA 2DEXX 4N2GA 4DKTA 1BWDA 1WD8A 2CI7A 2DEYX 3I2EA 4E4JA 2JERA 3P8PA 1G62A 3APMA 2JAJA 5AK7A 2ABRA 3JDWA 2CI3A 4N2HA 4N28A 1G61A 4N26A 4N2CA 4N2NA 7JDWA 3H7CX 4N22A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2ACI A;  1ZBR A;  4N24 A;  2CI1 A;  2CI4 A;  2AAF A;  1JDX A;  3H7K A;  5AN9 I;  3HVM A;  4JDW A;  4N2F A;  2DEW X;  3APN A;  4N2I A;  1WDA A;  3B1U A;  9JDW A;  8JDW A;  1S9R A;  2DW5 A;  2JDX A;  2Q3U A;  4N25 A;  4N20 A;  4YT9 A;  4N2E A;  3BPB A;  1VKP A;  4X8G A;  5M3Q A;  2CI6 A;  4N2M A;  4BOF A;  3I4A A;  3B1T A;  1H70 A;  4N2A A;  4YTG A;  2JDW A;  2A9G A;  6JDW A;  4YTB A;  3P8E A;  3RHY A;  1XKN A;  1WD9 A;  4X8C A;  5HP5 A;  2CMU A;  1RXX A;  2CI5 A;  1JDW A;  4N2D A;  2JAI A;  1LXY A;  2EWO A;  4N2L A;  4N2B A;  4N2K A;  5AK8 A;  5JDW A;  2C6Z A;  2DEX X;  4N2G A;  4DKT A;  1BWD A;  1WD8 A;  2CI7 A;  2DEY X;  3I2E A;  4E4J A;  2JER A;  3P8P A;  1G62 A;  3APM A;  2JAJ A;  5AK7 A;  2ABR A;  3JDW A;  2CI3 A;  4N2H A;  4N28 A;  1G61 A;  4N26 A;  4N2C A;  4N2N A;  7JDW A;  3H7C X;  4N22 A; 
#chains in the Genus database with same CATH topology
 2ACI A;  1ZBR A;  4N24 A;  2CI1 A;  2CI4 A;  2AAF A;  1JDX A;  3H7K A;  5AN9 I;  3HVM A;  4JDW A;  4N2F A;  2DEW X;  3APN A;  4N2I A;  1YNI A;  1WDA A;  3B1U A;  9JDW A;  8JDW A;  1S9R A;  2DW5 A;  2JDX A;  2Q3U A;  4N25 A;  4N20 A;  4YT9 A;  4N2E A;  3BPB A;  1VKP A;  4X8G A;  5M3Q A;  2CI6 A;  4N2M A;  4BOF A;  3I4A A;  3B1T A;  1H70 A;  4N2A A;  4YTG A;  2JDW A;  2A9G A;  6JDW A;  4YTB A;  3P8E A;  3RHY A;  1XKN A;  1WD9 A;  4X8C A;  5HP5 A;  2CMU A;  1RXX A;  2CI5 A;  1JDW A;  4N2D A;  2JAI A;  1LXY A;  2EWO A;  1YNF A;  4N2L A;  4N2B A;  4N2K A;  5AK8 A;  5JDW A;  2C6Z A;  2DEX X;  4N2G A;  4DKT A;  1BWD A;  1WD8 A;  2CI7 A;  2DEY X;  3I2E A;  4E4J A;  2JER A;  3P8P A;  1G62 A;  3APM A;  2JAJ A;  5AK7 A;  2ABR A;  3JDW A;  2CI3 A;  4N2H A;  4N28 A;  1G61 A;  4N26 A;  4N2C A;  4N2N A;  1YNH A;  7JDW A;  3H7C X;  4N22 A; 
#chains in the Genus database with same CATH homology
 2ACI A;  1ZBR A;  4N24 A;  2CI1 A;  2CI4 A;  2AAF A;  1JDX A;  3H7K A;  5AN9 I;  3HVM A;  4JDW A;  4N2F A;  2DEW X;  3APN A;  4N2I A;  1WDA A;  3B1U A;  9JDW A;  8JDW A;  1S9R A;  2DW5 A;  2JDX A;  2Q3U A;  4N25 A;  4N20 A;  4YT9 A;  4N2E A;  3BPB A;  1VKP A;  4X8G A;  5M3Q A;  2CI6 A;  4N2M A;  4BOF A;  3I4A A;  3B1T A;  1H70 A;  4N2A A;  4YTG A;  2JDW A;  2A9G A;  6JDW A;  4YTB A;  3P8E A;  3RHY A;  1XKN A;  1WD9 A;  4X8C A;  5HP5 A;  2CMU A;  1RXX A;  2CI5 A;  1JDW A;  4N2D A;  2JAI A;  1LXY A;  2EWO A;  4N2L A;  4N2B A;  4N2K A;  5AK8 A;  5JDW A;  2C6Z A;  2DEX X;  4N2G A;  4DKT A;  1BWD A;  1WD8 A;  2CI7 A;  2DEY X;  3I2E A;  4E4J A;  2JER A;  3P8P A;  1G62 A;  3APM A;  2JAJ A;  5AK7 A;  2ABR A;  3JDW A;  2CI3 A;  4N2H A;  4N28 A;  1G61 A;  4N26 A;  4N2C A;  4N2N A;  7JDW A;  3H7C X;  4N22 A; 
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similar chains in the pdb database (?% sequence similarity)

 
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