1AX3 | Genus

Total Genus 43

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	43
sequence length	162
structure length	162
Chain Sequence	MIAEPLQNEIGEEVFVSPITGEIHPITDVPDQVFSGKMMGDGFAILPSEGIVVSPVRGKILNVFPTKHAIGLQSDGGREILIHFGIDTVSLKGEGFTSFVSEGDRVEPGQKLLEVDLDAVKPNVPSLMTPIVFTNLAEGETVSIKASGSVNREQEDIVKIEK

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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Viewer cachePut cache://localLOAD_/file/5d29a9d747e4f93811b112f3/pdb.gz

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The Resolver thinks Pdb

loadScript /static/js/j2s/core/corebio.z.js

Time for openFile(/file/5d29a9d747e4f93811b112f3/pdb.gz): 1112 ms

reading 162 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

Default Van der Waals type for model set to Jmol

162 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Time for creating model: 19 ms

Adding embedded #jmolscript: select ({0:161});backbone only;select *;

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Phosphotransferase system
source organism	Bacillus subtilis
publication title	High-resolution solution structure of Bacillus subtilis IIAglc. pubmed doi rcsb
molecule keywords	GLUCOSE PERMEASE IIA DOMAIN
total genus	43
structure length	162
sequence length	162
ec nomenclature	ec 2.7.1.199: Protein-N(pi)-phosphohistidine--D-glucose phosphotransferase.
pdb deposition date	1997-10-25

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00358	PTS_EIIA_1	phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.70.70.10	Mainly Beta	Distorted Sandwich	Glucose Permease (Domain IIA)	Glucose Permease (Domain IIA)	1ax3A00

4JBWM 1GPRA 1F3ZA 3IT7A 1GLDF 4QPBA 1GGRA 3IT5A 3SLUA 1F3GA 1GLCF 2F3GA 2HSIA 2GPRA 1QWYA 4RNYA 3CSQA 5B0HA 2B44A 2B13A 1O2FA 2MP0B 2B0PA 4QP5A 4LXCA 3OURB 4RNZA 4ZYBA 5KVPA 4BH5A 1AX3A 1GLAF 1GLEF 1GLBF 2GU1A 3NYYA 3TUFB 3UZ0B
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 4JBW M;  1GPR A;  1F3Z A;  3IT7 A;  1GLD F;  4QPB A;  1GGR A;  3IT5 A;  3SLU A;  1F3G A;  1GLC F;  2F3G A;  2HSI A;  2GPR A;  1QWY A;  4RNY A;  3CSQ A;  5B0H A;  2B44 A;  2B13 A;  1O2F A;  2MP0 B;  2B0P A;  4QP5 A;  4LXC A;  3OUR B;  4RNZ A;  4ZYB A;  5KVP A;  4BH5 A;  1AX3 A;  1GLA F;  1GLE F;  1GLB F;  2GU1 A;  3NYY A;  3TUF B;  3UZ0 B; 
#chains in the Genus database with same CATH topology
 4JBW M;  1GPR A;  1F3Z A;  3IT7 A;  1GLD F;  4QPB A;  1GGR A;  3IT5 A;  3SLU A;  1F3G A;  1GLC F;  2F3G A;  2HSI A;  2GPR A;  1QWY A;  4RNY A;  3CSQ A;  5B0H A;  2B44 A;  2B13 A;  1O2F A;  2MP0 B;  2B0P A;  4QP5 A;  4LXC A;  3OUR B;  4RNZ A;  4ZYB A;  5KVP A;  4BH5 A;  1AX3 A;  1GLA F;  1GLE F;  1GLB F;  2GU1 A;  3NYY A;  3TUF B;  3UZ0 B; 
#chains in the Genus database with same CATH homology
 4JBW M;  1GPR A;  1F3Z A;  3IT7 A;  1GLD F;  4QPB A;  1GGR A;  3IT5 A;  3SLU A;  1F3G A;  1GLC F;  2F3G A;  2HSI A;  2GPR A;  1QWY A;  4RNY A;  3CSQ A;  5B0H A;  2B44 A;  2B13 A;  1O2F A;  2MP0 B;  2B0P A;  4QP5 A;  4LXC A;  3OUR B;  4RNZ A;  4ZYB A;  5KVP A;  4BH5 A;  1AX3 A;  1GLA F;  1GLE F;  1GLB F;  2GU1 A;  3NYY A;  3TUF B;  3UZ0 B;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1AX3A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations