1B7I | Genus

Total Genus 14

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	14
sequence length	66
structure length	66
Chain Sequence	ANQASVVANQLIPINTALTLVMMRSEVVTPVGIPAEDIPRLVSMQVNRAVPLGTTLMPDMVRGYAA

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 66 atoms

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66 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Antifreeze protein
source organism	Macrozoarces americanus
publication title	Quantitative and qualitative analysis of type III antifreeze protein structure and function. pubmed doi rcsb
molecule keywords	PROTEIN (ANTIFREEZE PROTEIN TYPE III)
total genus	14
structure length	66
sequence length	66
ec nomenclature
pdb deposition date	1999-01-24

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.90.1210.10	Alpha Beta	Alpha-Beta Complex	Type Iii Antifreeze Protein Isoform Hplc 12	Antifreeze-like/N-acetylneuraminic acid synthase C-terminal domain	1b7iA00

4UR6A 7MSIA 5MSIA 1C89A 2LX3A 3MSIA 1MSIA 4IPIA 4AMEA 3NLAA 1B7JA 1KDFA 9MSIA 9AMEA 1HG7A 3FRNA 1UCSA 2ZDRA 3AMEA 7AMEA 2SPGA 1MSJA 2LX2A 2AMEA 2WQPA 3CM4A 4MSIA 8AMEA 1B7IA 1JABA 8MSIA 1OPSA 3QF6A 6AMEA 1EKLA 1B7KA 4IPJA 4NY6A 6MSIA 1VLIA 1AMEA 4UR4A 2JIAA 2MSIA 3G8RA 1XUUA 1WVOA 1KDEA 2MSJA 1GZIA 3RDNA 1C8AA 1XUZA
chains in the Genus database with same CATH superfamily

4UR6A 7MSIA 5MSIA 1C89A 2LX3A 3MSIA 1MSIA 4IPIA 4AMEA 3NLAA 1B7JA 1KDFA 9MSIA 9AMEA 1HG7A 3FRNA 1UCSA 2ZDRA 3AMEA 7AMEA 2SPGA 1MSJA 2LX2A 2AMEA 2WQPA 3CM4A 4MSIA 8AMEA 1B7IA 1JABA 8MSIA 1OPSA 3LAZA 3QF6A 6AMEA 1EKLA 1B7KA 4IPJA 4NY6A 6MSIA 1VLIA 1AMEA 4UR4A 2JIAA 2MSIA 3G8RA 1XUUA 1WVOA 1KDEA 2MSJA 1GZIA 3K3SA 3RDNA 1C8AA 1XUZA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 4UR6 A;  7MSI A;  5MSI A;  1C89 A;  2LX3 A;  3MSI A;  1MSI A;  4IPI A;  4AME A;  3NLA A;  1B7J A;  1KDF A;  9MSI A;  9AME A;  1HG7 A;  3FRN A;  1UCS A;  2ZDR A;  3AME A;  7AME A;  2SPG A;  1MSJ A;  2LX2 A;  2AME A;  2WQP A;  3CM4 A;  4MSI A;  8AME A;  1B7I A;  1JAB A;  8MSI A;  1OPS A;  3QF6 A;  6AME A;  1EKL A;  1B7K A;  4IPJ A;  4NY6 A;  6MSI A;  1VLI A;  1AME A;  4UR4 A;  2JIA A;  2MSI A;  3G8R A;  1XUU A;  1WVO A;  1KDE A;  2MSJ A;  1GZI A;  3RDN A;  1C8A A;  1XUZ A; 
#chains in the Genus database with same CATH topology
 4UR6 A;  7MSI A;  5MSI A;  1C89 A;  2LX3 A;  3MSI A;  1MSI A;  4IPI A;  4AME A;  3NLA A;  1B7J A;  1KDF A;  9MSI A;  9AME A;  1HG7 A;  3FRN A;  1UCS A;  2ZDR A;  3AME A;  7AME A;  2SPG A;  1MSJ A;  2LX2 A;  2AME A;  2WQP A;  3CM4 A;  4MSI A;  8AME A;  1B7I A;  1JAB A;  8MSI A;  1OPS A;  3LAZ A;  3QF6 A;  6AME A;  1EKL A;  1B7K A;  4IPJ A;  4NY6 A;  6MSI A;  1VLI A;  1AME A;  4UR4 A;  2JIA A;  2MSI A;  3G8R A;  1XUU A;  1WVO A;  1KDE A;  2MSJ A;  1GZI A;  3K3S A;  3RDN A;  1C8A A;  1XUZ A; 
#chains in the Genus database with same CATH homology
 4UR6 A;  7MSI A;  5MSI A;  1C89 A;  2LX3 A;  3MSI A;  1MSI A;  4IPI A;  4AME A;  3NLA A;  1B7J A;  1KDF A;  9MSI A;  9AME A;  1HG7 A;  3FRN A;  1UCS A;  2ZDR A;  3AME A;  7AME A;  2SPG A;  1MSJ A;  2LX2 A;  2AME A;  2WQP A;  3CM4 A;  4MSI A;  8AME A;  1B7I A;  1JAB A;  8MSI A;  1OPS A;  3QF6 A;  6AME A;  1EKL A;  1B7K A;  4IPJ A;  4NY6 A;  6MSI A;  1VLI A;  1AME A;  4UR4 A;  2JIA A;  2MSI A;  3G8R A;  1XUU A;  1WVO A;  1KDE A;  2MSJ A;  1GZI A;  3RDN A;  1C8A A;  1XUZ A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1B7IA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN