1C89 | Genus

Total Genus 11

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	11
sequence length	134
structure length	134
Chain Sequence	NKASVVANQLIPINTALTLIMMKAEVVTPMGIPAEEIPNLVGMQVNRAVPLGTTLMPDMVKNYEDGTTSPGLKSVVANQLIPINTALTLVMMKAEEVSPKGIPSEEISKLVGMQVNRAVYLDQTLMPDMVKNYE

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Antifreeze protein
source organism	Pachycara brachycephalum
publication title	NMR analysis of type III antifreeze protein intramolecular dimer. Structural basis for enhanced activity. pubmed doi rcsb
molecule keywords	ANTIFREEZE PROTEIN TYPE III
total genus	11
structure length	134
sequence length	134
ec nomenclature
pdb deposition date	2000-05-04

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.90.1210.10	Alpha Beta	Alpha-Beta Complex	Type Iii Antifreeze Protein Isoform Hplc 12	Antifreeze-like/N-acetylneuraminic acid synthase C-terminal domain	1c89A01
3.90.1210.10	Alpha Beta	Alpha-Beta Complex	Type Iii Antifreeze Protein Isoform Hplc 12	Antifreeze-like/N-acetylneuraminic acid synthase C-terminal domain	1c89A02

9MSIA 1HG7A 2JIAA 3MSIA 9AMEA 4UR6A 1KDFA 4UR4A 6MSIA 7AMEA 1XUUA 3CM4A 1B7KA 3RDNA 2AMEA 1XUZA 2MSIA 2LX2A 4IPIA 4AMEA 1B7JA 4NY6A 1MSIA 2WQPA 2ZDRA 8AMEA 1OPSA 1WVOA 3NLAA 1C89A 1KDEA 5MSIA 8MSIA 3FRNA 1UCSA 7MSIA 2SPGA 1AMEA 1B7IA 1JABA 1C8AA 6AMEA 1MSJA 1GZIA 3AMEA 3QF6A 2MSJA 3G8RA 1EKLA 4IPJA 1VLIA 2LX3A 4MSIA
chains in the Genus database with same CATH superfamily

9MSIA 1HG7A 2JIAA 3MSIA 9AMEA 4UR6A 1KDFA 4UR4A 6MSIA 7AMEA 1XUUA 3CM4A 1B7KA 3RDNA 2AMEA 1XUZA 2MSIA 2LX2A 4IPIA 4AMEA 1B7JA 4NY6A 1MSIA 2WQPA 2ZDRA 8AMEA 1OPSA 1WVOA 3NLAA 1C89A 1KDEA 5MSIA 8MSIA 3FRNA 3LAZA 1UCSA 7MSIA 2SPGA 1AMEA 1B7IA 1JABA 1C8AA 6AMEA 1MSJA 1GZIA 3AMEA 3QF6A 3K3SA 2MSJA 3G8RA 1EKLA 4IPJA 1VLIA 2LX3A 4MSIA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 9MSI A;  1HG7 A;  2JIA A;  3MSI A;  9AME A;  4UR6 A;  1KDF A;  4UR4 A;  6MSI A;  7AME A;  1XUU A;  3CM4 A;  1B7K A;  3RDN A;  2AME A;  1XUZ A;  2MSI A;  2LX2 A;  4IPI A;  4AME A;  1B7J A;  4NY6 A;  1MSI A;  2WQP A;  2ZDR A;  8AME A;  1OPS A;  1WVO A;  3NLA A;  1C89 A;  1KDE A;  5MSI A;  8MSI A;  3FRN A;  1UCS A;  7MSI A;  2SPG A;  1AME A;  1B7I A;  1JAB A;  1C8A A;  6AME A;  1MSJ A;  1GZI A;  3AME A;  3QF6 A;  2MSJ A;  3G8R A;  1EKL A;  4IPJ A;  1VLI A;  2LX3 A;  4MSI A; 
#chains in the Genus database with same CATH topology
 9MSI A;  1HG7 A;  2JIA A;  3MSI A;  9AME A;  4UR6 A;  1KDF A;  4UR4 A;  6MSI A;  7AME A;  1XUU A;  3CM4 A;  1B7K A;  3RDN A;  2AME A;  1XUZ A;  2MSI A;  2LX2 A;  4IPI A;  4AME A;  1B7J A;  4NY6 A;  1MSI A;  2WQP A;  2ZDR A;  8AME A;  1OPS A;  1WVO A;  3NLA A;  1C89 A;  1KDE A;  5MSI A;  8MSI A;  3FRN A;  3LAZ A;  1UCS A;  7MSI A;  2SPG A;  1AME A;  1B7I A;  1JAB A;  1C8A A;  6AME A;  1MSJ A;  1GZI A;  3AME A;  3QF6 A;  3K3S A;  2MSJ A;  3G8R A;  1EKL A;  4IPJ A;  1VLI A;  2LX3 A;  4MSI A; 
#chains in the Genus database with same CATH homology
 9MSI A;  1HG7 A;  2JIA A;  3MSI A;  9AME A;  4UR6 A;  1KDF A;  4UR4 A;  6MSI A;  7AME A;  1XUU A;  3CM4 A;  1B7K A;  3RDN A;  2AME A;  1XUZ A;  2MSI A;  2LX2 A;  4IPI A;  4AME A;  1B7J A;  4NY6 A;  1MSI A;  2WQP A;  2ZDR A;  8AME A;  1OPS A;  1WVO A;  3NLA A;  1C89 A;  1KDE A;  5MSI A;  8MSI A;  3FRN A;  1UCS A;  7MSI A;  2SPG A;  1AME A;  1B7I A;  1JAB A;  1C8A A;  6AME A;  1MSJ A;  1GZI A;  3AME A;  3QF6 A;  2MSJ A;  3G8R A;  1EKL A;  4IPJ A;  1VLI A;  2LX3 A;  4MSI A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1C89A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN