1EJRB

Crystal structure of the d221a variant of klebsiella aerogenes urease
Total Genus 17
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
17
sequence length
101
structure length
101
Chain Sequence
MIPGEYHVKPGQIALNTGRATCRVVVENHGDRPIQVGSHYHFAEVNPALKFDRQQAAGYRLNIPAGTAVRFEPGQKREVELVAFAGHRAVFGFRGEVMGPL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase
source organism Klebsiella aerogenes
publication title Kinetic and structural characterization of urease active site variants.
pubmed doi rcsb
molecule keywords UREASE ALPHA SUBUNIT
total genus 17
structure length 101
sequence length 101
ec nomenclature ec 3.5.1.5: Urease.
pdb deposition date 2000-03-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF00699 Urease_beta Urease beta subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.150.10 Mainly Beta Ribbon Urease, subunit B Urease, beta subunit 1ejrB00
1FWDB 1E9ZA 1FWJB 1UBPB 1KRAB 1EJSB 1EJTB 1EJRB 4EPEB 1A5MB 4UBPB 2KAUB 4EPBB 1A5KB 1KRCB 3QGAA 1EF2B 1IE7B 4AC7B 1FWEB 1FWAB 4EP8B 4EPDB 4Z42B 1FWIB 1FWGB 1FWFB 4H9MA 1A5NB 4CEXB 3LA4A 1EJXB 1FWBB 1FWHB 4GOAA 1EJVB 1A5LB 1A5OB 2UBPB 1KRBB 3QGKA 4GY7A 1EJWB 1FWCB 3UBPB 5A6TB 4G7EB 1E9YA 1S3TB 5G4HB 4G7EA 5FSEB 1EJUB 5FSDB 4CEUB
chains in the Genus database with same CATH superfamily
1FWDB 1E9ZA 1FWJB 1UBPB 1KRAB 1EJSB 1EJTB 1EJRB 4EPEB 1A5MB 4UBPB 2KAUB 4EPBB 1A5KB 1KRCB 3QGAA 1EF2B 1IE7B 4AC7B 1FWEB 1FWAB 4EP8B 4EPDB 4Z42B 1FWIB 1FWGB 1FWFB 4H9MA 1A5NB 4CEXB 3LA4A 1EJXB 1FWBB 1FWHB 4GOAA 1EJVB 1A5LB 1A5OB 2UBPB 1KRBB 3QGKA 4GY7A 1EJWB 1FWCB 3UBPB 5A6TB 4G7EB 1E9YA 1S3TB 5G4HB 4G7EA 5FSEB 1EJUB 5FSDB 4CEUB
chains in the Genus database with same CATH topology
1FWDB 1E9ZA 1FWJB 1UBPB 1KRAB 1EJSB 1EJTB 1EJRB 4EPEB 1A5MB 4UBPB 2KAUB 4EPBB 1A5KB 1KRCB 3QGAA 1EF2B 1IE7B 4AC7B 1FWEB 1FWAB 4EP8B 4EPDB 4Z42B 1FWIB 1FWGB 1FWFB 4H9MA 1A5NB 4CEXB 3LA4A 1EJXB 1FWBB 1FWHB 4GOAA 1EJVB 1A5LB 1A5OB 2UBPB 1KRBB 3QGKA 4GY7A 1EJWB 1FWCB 3UBPB 5A6TB 4G7EB 1E9YA 1S3TB 5G4HB 4G7EA 5FSEB 1EJUB 5FSDB 4CEUB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1FWD B;  1E9Z A;  1FWJ B;  1UBP B;  1KRA B;  1EJS B;  1EJT B;  1EJR B;  4EPE B;  1A5M B;  4UBP B;  2KAU B;  4EPB B;  1A5K B;  1KRC B;  3QGA A;  1EF2 B;  1IE7 B;  4AC7 B;  1FWE B;  1FWA B;  4EP8 B;  4EPD B;  4Z42 B;  1FWI B;  1FWG B;  1FWF B;  4H9M A;  1A5N B;  4CEX B;  3LA4 A;  1EJX B;  1FWB B;  1FWH B;  4GOA A;  1EJV B;  1A5L B;  1A5O B;  2UBP B;  1KRB B;  3QGK A;  4GY7 A;  1EJW B;  1FWC B;  3UBP B;  5A6T B;  4G7E B;  1E9Y A;  1S3T B;  5G4H B;  4G7E A;  5FSE B;  1EJU B;  5FSD B;  4CEU B; 
#chains in the Genus database with same CATH topology
 1FWD B;  1E9Z A;  1FWJ B;  1UBP B;  1KRA B;  1EJS B;  1EJT B;  1EJR B;  4EPE B;  1A5M B;  4UBP B;  2KAU B;  4EPB B;  1A5K B;  1KRC B;  3QGA A;  1EF2 B;  1IE7 B;  4AC7 B;  1FWE B;  1FWA B;  4EP8 B;  4EPD B;  4Z42 B;  1FWI B;  1FWG B;  1FWF B;  4H9M A;  1A5N B;  4CEX B;  3LA4 A;  1EJX B;  1FWB B;  1FWH B;  4GOA A;  1EJV B;  1A5L B;  1A5O B;  2UBP B;  1KRB B;  3QGK A;  4GY7 A;  1EJW B;  1FWC B;  3UBP B;  5A6T B;  4G7E B;  1E9Y A;  1S3T B;  5G4H B;  4G7E A;  5FSE B;  1EJU B;  5FSD B;  4CEU B; 
#chains in the Genus database with same CATH homology
 1FWD B;  1E9Z A;  1FWJ B;  1UBP B;  1KRA B;  1EJS B;  1EJT B;  1EJR B;  4EPE B;  1A5M B;  4UBP B;  2KAU B;  4EPB B;  1A5K B;  1KRC B;  3QGA A;  1EF2 B;  1IE7 B;  4AC7 B;  1FWE B;  1FWA B;  4EP8 B;  4EPD B;  4Z42 B;  1FWI B;  1FWG B;  1FWF B;  4H9M A;  1A5N B;  4CEX B;  3LA4 A;  1EJX B;  1FWB B;  1FWH B;  4GOA A;  1EJV B;  1A5L B;  1A5O B;  2UBP B;  1KRB B;  3QGK A;  4GY7 A;  1EJW B;  1FWC B;  3UBP B;  5A6T B;  4G7E B;  1E9Y A;  1S3T B;  5G4H B;  4G7E A;  5FSE B;  1EJU B;  5FSD B;  4CEU B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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