1EJWB

Crystal structure of wild-type klebsiella aerogenes urease at 298k
Total Genus 18
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
18
sequence length
101
structure length
101
Chain Sequence
MIPGEYHVKPGQIALNTGRATCRVVVENHGDRPIQVGSHYHFAEVNPALKFDRQQAAGYRLNIPAGTAVRFEPGQKREVELVAFAGHRAVFGFRGEVMGPL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Crystal Structure of Wild-type Klebsiella aerogenes Urease at 298K
rcsb
molecule tags Hydrolase
source organism Klebsiella aerogenes
molecule keywords UREASE ALPHA SUBUNIT
total genus 18
structure length 101
sequence length 101
ec nomenclature ec 3.5.1.5: Urease.
pdb deposition date 2000-03-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF00699 Urease_beta Urease beta subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.150.10 Mainly Beta Ribbon Urease, subunit B Urease, beta subunit 1ejwB00
4CEXB 1FWBB 5G4HB 1EF2B 4GOAA 1IE7B 1FWGB 1KRBB 1E9YA 4EPDB 1KRAB 1EJRB 4Z42B 1A5KB 1EJSB 1UBPB 1S3TB 3UBPB 1A5NB 3QGKA 2UBPB 1EJUB 4G7EA 1FWJB 1A5OB 3LA4A 1FWEB 4AC7B 4G7EB 4EPBB 1E9ZA 1EJXB 1FWFB 1EJWB 1EJVB 4EPEB 1A5LB 1KRCB 2KAUB 5FSEB 1EJTB 1A5MB 4GY7A 4EP8B 4UBPB 5FSDB 4CEUB 1FWIB 1FWHB 1FWAB 5A6TB 3QGAA 4H9MA 1FWDB 1FWCB
chains in the Genus database with same CATH superfamily
4CEXB 1FWBB 5G4HB 1EF2B 4GOAA 1IE7B 1FWGB 1KRBB 1E9YA 4EPDB 1KRAB 1EJRB 4Z42B 1A5KB 1EJSB 1UBPB 1S3TB 3UBPB 1A5NB 3QGKA 2UBPB 1EJUB 4G7EA 1FWJB 1A5OB 3LA4A 1FWEB 4AC7B 4G7EB 4EPBB 1E9ZA 1EJXB 1FWFB 1EJWB 1EJVB 4EPEB 1A5LB 1KRCB 2KAUB 5FSEB 1EJTB 1A5MB 4GY7A 4EP8B 4UBPB 5FSDB 4CEUB 1FWIB 1FWHB 1FWAB 5A6TB 3QGAA 4H9MA 1FWDB 1FWCB
chains in the Genus database with same CATH topology
4CEXB 1FWBB 5G4HB 1EF2B 4GOAA 1IE7B 1FWGB 1KRBB 1E9YA 4EPDB 1KRAB 1EJRB 4Z42B 1A5KB 1EJSB 1UBPB 1S3TB 3UBPB 1A5NB 3QGKA 2UBPB 1EJUB 4G7EA 1FWJB 1A5OB 3LA4A 1FWEB 4AC7B 4G7EB 4EPBB 1E9ZA 1EJXB 1FWFB 1EJWB 1EJVB 4EPEB 1A5LB 1KRCB 2KAUB 5FSEB 1EJTB 1A5MB 4GY7A 4EP8B 4UBPB 5FSDB 4CEUB 1FWIB 1FWHB 1FWAB 5A6TB 3QGAA 4H9MA 1FWDB 1FWCB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4CEX B;  1FWB B;  5G4H B;  1EF2 B;  4GOA A;  1IE7 B;  1FWG B;  1KRB B;  1E9Y A;  4EPD B;  1KRA B;  1EJR B;  4Z42 B;  1A5K B;  1EJS B;  1UBP B;  1S3T B;  3UBP B;  1A5N B;  3QGK A;  2UBP B;  1EJU B;  4G7E A;  1FWJ B;  1A5O B;  3LA4 A;  1FWE B;  4AC7 B;  4G7E B;  4EPB B;  1E9Z A;  1EJX B;  1FWF B;  1EJW B;  1EJV B;  4EPE B;  1A5L B;  1KRC B;  2KAU B;  5FSE B;  1EJT B;  1A5M B;  4GY7 A;  4EP8 B;  4UBP B;  5FSD B;  4CEU B;  1FWI B;  1FWH B;  1FWA B;  5A6T B;  3QGA A;  4H9M A;  1FWD B;  1FWC B; 
#chains in the Genus database with same CATH topology
 4CEX B;  1FWB B;  5G4H B;  1EF2 B;  4GOA A;  1IE7 B;  1FWG B;  1KRB B;  1E9Y A;  4EPD B;  1KRA B;  1EJR B;  4Z42 B;  1A5K B;  1EJS B;  1UBP B;  1S3T B;  3UBP B;  1A5N B;  3QGK A;  2UBP B;  1EJU B;  4G7E A;  1FWJ B;  1A5O B;  3LA4 A;  1FWE B;  4AC7 B;  4G7E B;  4EPB B;  1E9Z A;  1EJX B;  1FWF B;  1EJW B;  1EJV B;  4EPE B;  1A5L B;  1KRC B;  2KAU B;  5FSE B;  1EJT B;  1A5M B;  4GY7 A;  4EP8 B;  4UBP B;  5FSD B;  4CEU B;  1FWI B;  1FWH B;  1FWA B;  5A6T B;  3QGA A;  4H9M A;  1FWD B;  1FWC B; 
#chains in the Genus database with same CATH homology
 4CEX B;  1FWB B;  5G4H B;  1EF2 B;  4GOA A;  1IE7 B;  1FWG B;  1KRB B;  1E9Y A;  4EPD B;  1KRA B;  1EJR B;  4Z42 B;  1A5K B;  1EJS B;  1UBP B;  1S3T B;  3UBP B;  1A5N B;  3QGK A;  2UBP B;  1EJU B;  4G7E A;  1FWJ B;  1A5O B;  3LA4 A;  1FWE B;  4AC7 B;  4G7E B;  4EPB B;  1E9Z A;  1EJX B;  1FWF B;  1EJW B;  1EJV B;  4EPE B;  1A5L B;  1KRC B;  2KAU B;  5FSE B;  1EJT B;  1A5M B;  4GY7 A;  4EP8 B;  4UBP B;  5FSD B;  4CEU B;  1FWI B;  1FWH B;  1FWA B;  5A6T B;  3QGA A;  4H9M A;  1FWD B;  1FWC B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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