1F3G | Genus

Total Genus 35

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	35
sequence length	150
structure length	150
Chain Sequence	TIEIIAPLSGEIVNIEDVPDVVFAEKIVGDGIAIKPTGNKMVAPVDGTIGKIFETNHAFSIESDSGVELFVHFGIDTVELKGEGFKRIAEEGQRVKVGDTVIEFDLPLLEEKAKSTLTPVVISNMDEIKELIKLSGSVTVGETPVIRIKK

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Phosphotransferase
source organism	Escherichia coli
publication title	Three-dimensional structure of the Escherichia coli phosphocarrier protein IIIglc. pubmed doi rcsb
molecule keywords	GLUCOSE-SPECIFIC PHOSPHOCARRIER PROTEIN IIAGLC
total genus	35
structure length	150
sequence length	150
ec nomenclature
pdb deposition date	1991-08-28

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00358	PTS_EIIA_1	phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.70.70.10	Mainly Beta	Distorted Sandwich	Glucose Permease (Domain IIA)	Glucose Permease (Domain IIA)	1f3gA00

2HSIA 4QP5A 4JBWM 1GLAF 4BH5A 3UZ0B 3IT7A 1O2FA 2GU1A 1GLCF 2MP0B 1QWYA 4ZYBA 1AX3A 3TUFB 3CSQA 4RNZA 1GPRA 5KVPA 4QPBA 1F3ZA 2B13A 3SLUA 1F3GA 4LXCA 3NYYA 3OURB 3IT5A 1GLEF 5B0HA 1GGRA 2F3GA 2GPRA 4RNYA 2B0PA 1GLDF 2B44A 1GLBF
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 2HSI A;  4QP5 A;  4JBW M;  1GLA F;  4BH5 A;  3UZ0 B;  3IT7 A;  1O2F A;  2GU1 A;  1GLC F;  2MP0 B;  1QWY A;  4ZYB A;  1AX3 A;  3TUF B;  3CSQ A;  4RNZ A;  1GPR A;  5KVP A;  4QPB A;  1F3Z A;  2B13 A;  3SLU A;  1F3G A;  4LXC A;  3NYY A;  3OUR B;  3IT5 A;  1GLE F;  5B0H A;  1GGR A;  2F3G A;  2GPR A;  4RNY A;  2B0P A;  1GLD F;  2B44 A;  1GLB F; 
#chains in the Genus database with same CATH topology
 2HSI A;  4QP5 A;  4JBW M;  1GLA F;  4BH5 A;  3UZ0 B;  3IT7 A;  1O2F A;  2GU1 A;  1GLC F;  2MP0 B;  1QWY A;  4ZYB A;  1AX3 A;  3TUF B;  3CSQ A;  4RNZ A;  1GPR A;  5KVP A;  4QPB A;  1F3Z A;  2B13 A;  3SLU A;  1F3G A;  4LXC A;  3NYY A;  3OUR B;  3IT5 A;  1GLE F;  5B0H A;  1GGR A;  2F3G A;  2GPR A;  4RNY A;  2B0P A;  1GLD F;  2B44 A;  1GLB F; 
#chains in the Genus database with same CATH homology
 2HSI A;  4QP5 A;  4JBW M;  1GLA F;  4BH5 A;  3UZ0 B;  3IT7 A;  1O2F A;  2GU1 A;  1GLC F;  2MP0 B;  1QWY A;  4ZYB A;  1AX3 A;  3TUF B;  3CSQ A;  4RNZ A;  1GPR A;  5KVP A;  4QPB A;  1F3Z A;  2B13 A;  3SLU A;  1F3G A;  4LXC A;  3NYY A;  3OUR B;  3IT5 A;  1GLE F;  5B0H A;  1GGR A;  2F3G A;  2GPR A;  4RNY A;  2B0P A;  1GLD F;  2B44 A;  1GLB F;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1F3GA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations