1F3Z | Genus

Total Genus 35

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	35
sequence length	150
structure length	150
Chain Sequence	TIEIIAPLSGEIVNIEDVPDVVFAEKIVGDGIAIKPTGNKMVAPVDGTIGKIFETNHAFSIESDSGVELFVHFGIDTVELKGEGFKRIAEEGQRVKVGDTVIEFDLPLLEEKAKSTLTPVVISNMDEIKELIKLSGSVTVGETPVIRIKK

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 150 atoms

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1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

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150 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Phosphotransferase
publication title	Structural studies of the Escherichia coli signal transducing protein IIAGlc: implications for target recognition. pubmed doi rcsb
molecule keywords	GLUCOSE-SPECIFIC PHOSPHOCARRIER
total genus	35
structure length	150
sequence length	150
ec nomenclature	ec 2.7.1.69: Transferred entry: 2.7.1.191, 2.7.1.192, 2.7.1.193, 2.7.1.194, 2.7.1.195,
pdb deposition date	1997-10-09

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00358	PTS_EIIA_1	phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.70.70.10	Mainly Beta	Distorted Sandwich	Glucose Permease (Domain IIA)	Glucose Permease (Domain IIA)	1f3zA00

3CSQA 3UZ0B 3IT7A 4QPBA 4LXCA 1O2FA 3SLUA 2MP0B 1GLAF 1GGRA 2B13A 5KVPA 5B0HA 1GPRA 1GLDF 2GU1A 4ZYBA 2GPRA 2F3GA 1QWYA 4BH5A 4RNYA 1F3ZA 2B44A 3TUFB 1GLEF 1GLCF 4JBWM 3NYYA 1AX3A 2B0PA 3IT5A 1F3GA 2HSIA 4RNZA 1GLBF 4QP5A 3OURB
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 3CSQ A;  3UZ0 B;  3IT7 A;  4QPB A;  4LXC A;  1O2F A;  3SLU A;  2MP0 B;  1GLA F;  1GGR A;  2B13 A;  5KVP A;  5B0H A;  1GPR A;  1GLD F;  2GU1 A;  4ZYB A;  2GPR A;  2F3G A;  1QWY A;  4BH5 A;  4RNY A;  1F3Z A;  2B44 A;  3TUF B;  1GLE F;  1GLC F;  4JBW M;  3NYY A;  1AX3 A;  2B0P A;  3IT5 A;  1F3G A;  2HSI A;  4RNZ A;  1GLB F;  4QP5 A;  3OUR B; 
#chains in the Genus database with same CATH topology
 3CSQ A;  3UZ0 B;  3IT7 A;  4QPB A;  4LXC A;  1O2F A;  3SLU A;  2MP0 B;  1GLA F;  1GGR A;  2B13 A;  5KVP A;  5B0H A;  1GPR A;  1GLD F;  2GU1 A;  4ZYB A;  2GPR A;  2F3G A;  1QWY A;  4BH5 A;  4RNY A;  1F3Z A;  2B44 A;  3TUF B;  1GLE F;  1GLC F;  4JBW M;  3NYY A;  1AX3 A;  2B0P A;  3IT5 A;  1F3G A;  2HSI A;  4RNZ A;  1GLB F;  4QP5 A;  3OUR B; 
#chains in the Genus database with same CATH homology
 3CSQ A;  3UZ0 B;  3IT7 A;  4QPB A;  4LXC A;  1O2F A;  3SLU A;  2MP0 B;  1GLA F;  1GGR A;  2B13 A;  5KVP A;  5B0H A;  1GPR A;  1GLD F;  2GU1 A;  4ZYB A;  2GPR A;  2F3G A;  1QWY A;  4BH5 A;  4RNY A;  1F3Z A;  2B44 A;  3TUF B;  1GLE F;  1GLC F;  4JBW M;  3NYY A;  1AX3 A;  2B0P A;  3IT5 A;  1F3G A;  2HSI A;  4RNZ A;  1GLB F;  4QP5 A;  3OUR B;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1F3ZA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations