1FWAB

Klebsiella aerogenes urease, c319a variant at ph 7.5
Total Genus 17
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
17
sequence length
101
structure length
101
Chain Sequence
MIPGEYHVKPGQIALNTGRATCRVVVENHGDRPIQVGSHYHFAEVNPALKFDRQQAAGYRLNIPAGTAVRFEPGQKREVELVAFAGHRAVFGFRGEVMGPL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structures of Cys319 variants and acetohydroxamate-inhibited Klebsiella aerogenes urease.
pubmed doi rcsb
molecule tags Hydrolase
source organism Klebsiella aerogenes
molecule keywords UREASE
total genus 17
structure length 101
sequence length 101
ec nomenclature ec 3.5.1.5: Urease.
pdb deposition date 1997-04-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF00699 Urease_beta Urease beta subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.150.10 Mainly Beta Ribbon Urease, subunit B Urease, beta subunit 1fwaB00
1EJUB 1EJRB 2UBPB 3QGKA 1A5LB 5FSDB 4CEUB 1EJSB 1E9YA 1E9ZA 1FWBB 1EF2B 5G4HB 3UBPB 1KRAB 1FWGB 4G7EA 3QGAA 4CEXB 4EPEB 1FWAB 1A5OB 4G7EB 1A5KB 1FWEB 1KRCB 4EPBB 4UBPB 4EPDB 1FWDB 1FWFB 1A5MB 4GY7A 4GOAA 2KAUB 1A5NB 1EJTB 1FWCB 4Z42B 4AC7B 1EJWB 1UBPB 3LA4A 5FSEB 1KRBB 1FWHB 1EJVB 1IE7B 1S3TB 5A6TB 1FWIB 4EP8B 4H9MA 1FWJB 1EJXB
chains in the Genus database with same CATH superfamily
1EJUB 1EJRB 2UBPB 3QGKA 1A5LB 5FSDB 4CEUB 1EJSB 1E9YA 1E9ZA 1FWBB 1EF2B 5G4HB 3UBPB 1KRAB 1FWGB 4G7EA 3QGAA 4CEXB 4EPEB 1FWAB 1A5OB 4G7EB 1A5KB 1FWEB 1KRCB 4EPBB 4UBPB 4EPDB 1FWDB 1FWFB 1A5MB 4GY7A 4GOAA 2KAUB 1A5NB 1EJTB 1FWCB 4Z42B 4AC7B 1EJWB 1UBPB 3LA4A 5FSEB 1KRBB 1FWHB 1EJVB 1IE7B 1S3TB 5A6TB 1FWIB 4EP8B 4H9MA 1FWJB 1EJXB
chains in the Genus database with same CATH topology
1EJUB 1EJRB 2UBPB 3QGKA 1A5LB 5FSDB 4CEUB 1EJSB 1E9YA 1E9ZA 1FWBB 1EF2B 5G4HB 3UBPB 1KRAB 1FWGB 4G7EA 3QGAA 4CEXB 4EPEB 1FWAB 1A5OB 4G7EB 1A5KB 1FWEB 1KRCB 4EPBB 4UBPB 4EPDB 1FWDB 1FWFB 1A5MB 4GY7A 4GOAA 2KAUB 1A5NB 1EJTB 1FWCB 4Z42B 4AC7B 1EJWB 1UBPB 3LA4A 5FSEB 1KRBB 1FWHB 1EJVB 1IE7B 1S3TB 5A6TB 1FWIB 4EP8B 4H9MA 1FWJB 1EJXB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1EJU B;  1EJR B;  2UBP B;  3QGK A;  1A5L B;  5FSD B;  4CEU B;  1EJS B;  1E9Y A;  1E9Z A;  1FWB B;  1EF2 B;  5G4H B;  3UBP B;  1KRA B;  1FWG B;  4G7E A;  3QGA A;  4CEX B;  4EPE B;  1FWA B;  1A5O B;  4G7E B;  1A5K B;  1FWE B;  1KRC B;  4EPB B;  4UBP B;  4EPD B;  1FWD B;  1FWF B;  1A5M B;  4GY7 A;  4GOA A;  2KAU B;  1A5N B;  1EJT B;  1FWC B;  4Z42 B;  4AC7 B;  1EJW B;  1UBP B;  3LA4 A;  5FSE B;  1KRB B;  1FWH B;  1EJV B;  1IE7 B;  1S3T B;  5A6T B;  1FWI B;  4EP8 B;  4H9M A;  1FWJ B;  1EJX B; 
#chains in the Genus database with same CATH topology
 1EJU B;  1EJR B;  2UBP B;  3QGK A;  1A5L B;  5FSD B;  4CEU B;  1EJS B;  1E9Y A;  1E9Z A;  1FWB B;  1EF2 B;  5G4H B;  3UBP B;  1KRA B;  1FWG B;  4G7E A;  3QGA A;  4CEX B;  4EPE B;  1FWA B;  1A5O B;  4G7E B;  1A5K B;  1FWE B;  1KRC B;  4EPB B;  4UBP B;  4EPD B;  1FWD B;  1FWF B;  1A5M B;  4GY7 A;  4GOA A;  2KAU B;  1A5N B;  1EJT B;  1FWC B;  4Z42 B;  4AC7 B;  1EJW B;  1UBP B;  3LA4 A;  5FSE B;  1KRB B;  1FWH B;  1EJV B;  1IE7 B;  1S3T B;  5A6T B;  1FWI B;  4EP8 B;  4H9M A;  1FWJ B;  1EJX B; 
#chains in the Genus database with same CATH homology
 1EJU B;  1EJR B;  2UBP B;  3QGK A;  1A5L B;  5FSD B;  4CEU B;  1EJS B;  1E9Y A;  1E9Z A;  1FWB B;  1EF2 B;  5G4H B;  3UBP B;  1KRA B;  1FWG B;  4G7E A;  3QGA A;  4CEX B;  4EPE B;  1FWA B;  1A5O B;  4G7E B;  1A5K B;  1FWE B;  1KRC B;  4EPB B;  4UBP B;  4EPD B;  1FWD B;  1FWF B;  1A5M B;  4GY7 A;  4GOA A;  2KAU B;  1A5N B;  1EJT B;  1FWC B;  4Z42 B;  4AC7 B;  1EJW B;  1UBP B;  3LA4 A;  5FSE B;  1KRB B;  1FWH B;  1EJV B;  1IE7 B;  1S3T B;  5A6T B;  1FWI B;  4EP8 B;  4H9M A;  1FWJ B;  1EJX B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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