1GLB | Genus

Total Genus 32

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	32
sequence length	168
structure length	161
Chain Sequence	GLFDKLKSLVSTIEIIAPLSGEIVNIEDVPDVVFAEKIVGDGIAIKPTGNKMVAPVDGTIGKIFETNHAFSIESDSGVELFVHFGIDTVELKGEGFKRIAEEGQRVKVGDTVIEFDLPLLEEKAKSTLTPVVISNMDEIKELIKLSGSVTVGETPVIRIKK

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 161 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

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161 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Phosphotransferase
source organism	Escherichia coli
publication title	Structure of the regulatory complex of Escherichia coli IIIGlc with glycerol kinase. pubmed rcsb
molecule keywords	GLUCOSE-SPECIFIC PROTEIN IIIGlc
total genus	32
structure length	161
sequence length	168
ec nomenclature
pdb deposition date	1992-10-28

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
F	PF00358	PTS_EIIA_1	phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.70.70.10	Mainly Beta	Distorted Sandwich	Glucose Permease (Domain IIA)	Glucose Permease (Domain IIA)	1glbF00

2F3GA 5KVPA 4RNZA 4ZYBA 1AX3A 1O2FA 3NYYA 3SLUA 3IT7A 1GLBF 3OURB 5B0HA 2HSIA 1GLEF 2GPRA 4BH5A 4QP5A 2B44A 1GLAF 2B0PA 3CSQA 3TUFB 3IT5A 1GPRA 1GLCF 1F3ZA 2MP0B 4JBWM 4LXCA 1GLDF 3UZ0B 2B13A 1GGRA 4RNYA 1QWYA 1F3GA 2GU1A 4QPBA
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 2F3G A;  5KVP A;  4RNZ A;  4ZYB A;  1AX3 A;  1O2F A;  3NYY A;  3SLU A;  3IT7 A;  1GLB F;  3OUR B;  5B0H A;  2HSI A;  1GLE F;  2GPR A;  4BH5 A;  4QP5 A;  2B44 A;  1GLA F;  2B0P A;  3CSQ A;  3TUF B;  3IT5 A;  1GPR A;  1GLC F;  1F3Z A;  2MP0 B;  4JBW M;  4LXC A;  1GLD F;  3UZ0 B;  2B13 A;  1GGR A;  4RNY A;  1QWY A;  1F3G A;  2GU1 A;  4QPB A; 
#chains in the Genus database with same CATH topology
 2F3G A;  5KVP A;  4RNZ A;  4ZYB A;  1AX3 A;  1O2F A;  3NYY A;  3SLU A;  3IT7 A;  1GLB F;  3OUR B;  5B0H A;  2HSI A;  1GLE F;  2GPR A;  4BH5 A;  4QP5 A;  2B44 A;  1GLA F;  2B0P A;  3CSQ A;  3TUF B;  3IT5 A;  1GPR A;  1GLC F;  1F3Z A;  2MP0 B;  4JBW M;  4LXC A;  1GLD F;  3UZ0 B;  2B13 A;  1GGR A;  4RNY A;  1QWY A;  1F3G A;  2GU1 A;  4QPB A; 
#chains in the Genus database with same CATH homology
 2F3G A;  5KVP A;  4RNZ A;  4ZYB A;  1AX3 A;  1O2F A;  3NYY A;  3SLU A;  3IT7 A;  1GLB F;  3OUR B;  5B0H A;  2HSI A;  1GLE F;  2GPR A;  4BH5 A;  4QP5 A;  2B44 A;  1GLA F;  2B0P A;  3CSQ A;  3TUF B;  3IT5 A;  1GPR A;  1GLC F;  1F3Z A;  2MP0 B;  4JBW M;  4LXC A;  1GLD F;  3UZ0 B;  2B13 A;  1GGR A;  4RNY A;  1QWY A;  1F3G A;  2GU1 A;  4QPB A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1GLBF

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations