1GLDF

Cation promoted association (cpa) of a regulatory and target protein is controlled by phosphorylation
Total Genus 29

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
29
sequence length
168
structure length
161
Chain Sequence
GLFDKLKSLVSTIEIIAPLSGEIVNIEDVPDVVFAEKIVGDGIAIKPTGNKMVAPVDGTIGKIFETNHAFSIESDSGVELFVHFGIDTVELKGEGFKRIAEEGQRVKVGDTVIEFDLPLLEEKAKSTLTPVVISNMDEIKELIKLSGSVTVGETPVIRIKK

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
TI1 (3-6)EMPTYS13 (155-156)S3 (48-54)S1 (20-24)O1 (36-38)TIV1 (24-27)3H3 (143-145)S2 (28-31)3H1 (33-35)AH1 (39-43)AH2 (126-130)TI2 (44-47)TII2 (114-117)O2 (56-58)TIV2 (74-77)TI5 (108-111)S4 (58-61)S8 (103-105)TI3 (71-74)TI4 (81-84)S7 (85-90)TIV3 (92-95)TI6 (123-126)TI'1 (98-101)S10 (117-122)S11 (136-140)TII3 (157-160)TIV5 (140-143)TIV4 (131-134)S9 (112-113)S5 (65-70)S6 (76-81)3H2 (95-98)S12 (148-151)Updating...
connected with : NaN
publication title Cation-promoted association of a regulatory and target protein is controlled by protein phosphorylation.
pubmed doi rcsb
molecule keywords GLUCOSE-SPECIFIC PROTEIN IIIGlc
molecule tags Phosphotransferase
source organism Escherichia coli
total genus 29
structure length 161
sequence length 168
ec nomenclature
pdb deposition date 1994-03-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
F PF00358 PTS_EIIA_1 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.70.10 Mainly Beta Distorted Sandwich Glucose Permease (Domain IIA) Glucose Permease (Domain IIA) 1gldF00
2MP0B 4QP5A 4RNYA 3NYYA 3UZ0B 4BH5A 3OURB 1GLAF 1GGRA 4JBWM 5KVPA 2HSIA 2F3GA 2B13A 1F3ZA 4ZYBA 3TUFB 1GLEF 4QPBA 3IT7A 5B0HA 1F3GA 3SLUA 2GU1A 1GLCF 1GPRA 1AX3A 2GPRA 1GLDF 3IT5A 4LXCA 1GLBF 2B0PA 4RNZA 2B44A 1O2FA 1QWYA 3CSQA
chains in the Genus database with same CATH superfamily
2MP0B 4QP5A 4RNYA 3NYYA 3UZ0B 4BH5A 3OURB 1GLAF 1GGRA 4JBWM 5KVPA 2HSIA 2F3GA 2B13A 1F3ZA 4ZYBA 3TUFB 1GLEF 4QPBA 3IT7A 5B0HA 1F3GA 3SLUA 2GU1A 1GLCF 1GPRA 1AX3A 2GPRA 1GLDF 3IT5A 4LXCA 1GLBF 2B0PA 4RNZA 2B44A 1O2FA 1QWYA 3CSQA
chains in the Genus database with same CATH topology
2MP0B 4QP5A 4RNYA 3NYYA 3UZ0B 4BH5A 3OURB 1GLAF 1GGRA 4JBWM 5KVPA 2HSIA 2F3GA 2B13A 1F3ZA 4ZYBA 3TUFB 1GLEF 4QPBA 3IT7A 5B0HA 1F3GA 3SLUA 2GU1A 1GLCF 1GPRA 1AX3A 2GPRA 1GLDF 3IT5A 4LXCA 1GLBF 2B0PA 4RNZA 2B44A 1O2FA 1QWYA 3CSQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2MP0 B;  4QP5 A;  4RNY A;  3NYY A;  3UZ0 B;  4BH5 A;  3OUR B;  1GLA F;  1GGR A;  4JBW M;  5KVP A;  2HSI A;  2F3G A;  2B13 A;  1F3Z A;  4ZYB A;  3TUF B;  1GLE F;  4QPB A;  3IT7 A;  5B0H A;  1F3G A;  3SLU A;  2GU1 A;  1GLC F;  1GPR A;  1AX3 A;  2GPR A;  1GLD F;  3IT5 A;  4LXC A;  1GLB F;  2B0P A;  4RNZ A;  2B44 A;  1O2F A;  1QWY A;  3CSQ A; 
#chains in the Genus database with same CATH topology
 2MP0 B;  4QP5 A;  4RNY A;  3NYY A;  3UZ0 B;  4BH5 A;  3OUR B;  1GLA F;  1GGR A;  4JBW M;  5KVP A;  2HSI A;  2F3G A;  2B13 A;  1F3Z A;  4ZYB A;  3TUF B;  1GLE F;  4QPB A;  3IT7 A;  5B0H A;  1F3G A;  3SLU A;  2GU1 A;  1GLC F;  1GPR A;  1AX3 A;  2GPR A;  1GLD F;  3IT5 A;  4LXC A;  1GLB F;  2B0P A;  4RNZ A;  2B44 A;  1O2F A;  1QWY A;  3CSQ A; 
#chains in the Genus database with same CATH homology
 2MP0 B;  4QP5 A;  4RNY A;  3NYY A;  3UZ0 B;  4BH5 A;  3OUR B;  1GLA F;  1GGR A;  4JBW M;  5KVP A;  2HSI A;  2F3G A;  2B13 A;  1F3Z A;  4ZYB A;  3TUF B;  1GLE F;  4QPB A;  3IT7 A;  5B0H A;  1F3G A;  3SLU A;  2GU1 A;  1GLC F;  1GPR A;  1AX3 A;  2GPR A;  1GLD F;  3IT5 A;  4LXC A;  1GLB F;  2B0P A;  4RNZ A;  2B44 A;  1O2F A;  1QWY A;  3CSQ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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