1GLD | Genus

Total Genus 29

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	29
sequence length	168
structure length	161
Chain Sequence	GLFDKLKSLVSTIEIIAPLSGEIVNIEDVPDVVFAEKIVGDGIAIKPTGNKMVAPVDGTIGKIFETNHAFSIESDSGVELFVHFGIDTVELKGEGFKRIAEEGQRVKVGDTVIEFDLPLLEEKAKSTLTPVVISNMDEIKELIKLSGSVTVGETPVIRIKK

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 161 atoms

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1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

Default Van der Waals type for model set to Jmol

161 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Phosphotransferase
source organism	Escherichia coli
publication title	Cation-promoted association of a regulatory and target protein is controlled by protein phosphorylation. pubmed doi rcsb
molecule keywords	GLUCOSE-SPECIFIC PROTEIN IIIGlc
total genus	29
structure length	161
sequence length	168
ec nomenclature
pdb deposition date	1994-03-07

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
F	PF00358	PTS_EIIA_1	phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.70.70.10	Mainly Beta	Distorted Sandwich	Glucose Permease (Domain IIA)	Glucose Permease (Domain IIA)	1gldF00

4LXCA 1QWYA 4ZYBA 1F3ZA 2B44A 2HSIA 4QPBA 4RNYA 1AX3A 2B13A 2GU1A 3CSQA 3SLUA 2GPRA 3IT5A 2B0PA 1GLEF 1GLCF 1GLBF 3NYYA 3OURB 2MP0B 1GLDF 3TUFB 5B0HA 1GLAF 5KVPA 4BH5A 1GPRA 1O2FA 1GGRA 4JBWM 1F3GA 3IT7A 4QP5A 4RNZA 3UZ0B 2F3GA
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 4LXC A;  1QWY A;  4ZYB A;  1F3Z A;  2B44 A;  2HSI A;  4QPB A;  4RNY A;  1AX3 A;  2B13 A;  2GU1 A;  3CSQ A;  3SLU A;  2GPR A;  3IT5 A;  2B0P A;  1GLE F;  1GLC F;  1GLB F;  3NYY A;  3OUR B;  2MP0 B;  1GLD F;  3TUF B;  5B0H A;  1GLA F;  5KVP A;  4BH5 A;  1GPR A;  1O2F A;  1GGR A;  4JBW M;  1F3G A;  3IT7 A;  4QP5 A;  4RNZ A;  3UZ0 B;  2F3G A; 
#chains in the Genus database with same CATH topology
 4LXC A;  1QWY A;  4ZYB A;  1F3Z A;  2B44 A;  2HSI A;  4QPB A;  4RNY A;  1AX3 A;  2B13 A;  2GU1 A;  3CSQ A;  3SLU A;  2GPR A;  3IT5 A;  2B0P A;  1GLE F;  1GLC F;  1GLB F;  3NYY A;  3OUR B;  2MP0 B;  1GLD F;  3TUF B;  5B0H A;  1GLA F;  5KVP A;  4BH5 A;  1GPR A;  1O2F A;  1GGR A;  4JBW M;  1F3G A;  3IT7 A;  4QP5 A;  4RNZ A;  3UZ0 B;  2F3G A; 
#chains in the Genus database with same CATH homology
 4LXC A;  1QWY A;  4ZYB A;  1F3Z A;  2B44 A;  2HSI A;  4QPB A;  4RNY A;  1AX3 A;  2B13 A;  2GU1 A;  3CSQ A;  3SLU A;  2GPR A;  3IT5 A;  2B0P A;  1GLE F;  1GLC F;  1GLB F;  3NYY A;  3OUR B;  2MP0 B;  1GLD F;  3TUF B;  5B0H A;  1GLA F;  5KVP A;  4BH5 A;  1GPR A;  1O2F A;  1GGR A;  4JBW M;  1F3G A;  3IT7 A;  4QP5 A;  4RNZ A;  3UZ0 B;  2F3G A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1GLDF

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations