1GLE | Genus

Total Genus 30

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	30
sequence length	168
structure length	161
Chain Sequence	GLFDKLKSLVSTIEIIAPLSGEIVNIEDVPDVVFAEKIVGDGIAIKPTGNKMVAPVDGTIGKIFETNHAFSIESDSGVELFVHFGIDTVELKGEGFKRIAEEGQRVKVGDTVIEFDLPLLEEKAKSTLTPVVISNMDEIKELIKLSGSVTVGETPVIRIKK

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 161 atoms

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1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

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161 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Phosphotransferase
source organism	Escherichia coli
publication title	Cation-promoted association of a regulatory and target protein is controlled by protein phosphorylation. pubmed doi rcsb
molecule keywords	GLUCOSE-SPECIFIC PROTEIN IIIGlc
total genus	30
structure length	161
sequence length	168
ec nomenclature
pdb deposition date	1994-03-07

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
F	PF00358	PTS_EIIA_1	phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.70.70.10	Mainly Beta	Distorted Sandwich	Glucose Permease (Domain IIA)	Glucose Permease (Domain IIA)	1gleF00

3CSQA 4RNYA 3IT7A 1F3ZA 3TUFB 2HSIA 2B0PA 4LXCA 1GPRA 3NYYA 1F3GA 1GLEF 1AX3A 2GU1A 2F3GA 3OURB 5B0HA 5KVPA 1O2FA 1GGRA 4RNZA 4QPBA 4ZYBA 2GPRA 3UZ0B 1GLDF 4JBWM 2B13A 1GLCF 1QWYA 3SLUA 3IT5A 1GLBF 4QP5A 2B44A 1GLAF 4BH5A 2MP0B
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 3CSQ A;  4RNY A;  3IT7 A;  1F3Z A;  3TUF B;  2HSI A;  2B0P A;  4LXC A;  1GPR A;  3NYY A;  1F3G A;  1GLE F;  1AX3 A;  2GU1 A;  2F3G A;  3OUR B;  5B0H A;  5KVP A;  1O2F A;  1GGR A;  4RNZ A;  4QPB A;  4ZYB A;  2GPR A;  3UZ0 B;  1GLD F;  4JBW M;  2B13 A;  1GLC F;  1QWY A;  3SLU A;  3IT5 A;  1GLB F;  4QP5 A;  2B44 A;  1GLA F;  4BH5 A;  2MP0 B; 
#chains in the Genus database with same CATH topology
 3CSQ A;  4RNY A;  3IT7 A;  1F3Z A;  3TUF B;  2HSI A;  2B0P A;  4LXC A;  1GPR A;  3NYY A;  1F3G A;  1GLE F;  1AX3 A;  2GU1 A;  2F3G A;  3OUR B;  5B0H A;  5KVP A;  1O2F A;  1GGR A;  4RNZ A;  4QPB A;  4ZYB A;  2GPR A;  3UZ0 B;  1GLD F;  4JBW M;  2B13 A;  1GLC F;  1QWY A;  3SLU A;  3IT5 A;  1GLB F;  4QP5 A;  2B44 A;  1GLA F;  4BH5 A;  2MP0 B; 
#chains in the Genus database with same CATH homology
 3CSQ A;  4RNY A;  3IT7 A;  1F3Z A;  3TUF B;  2HSI A;  2B0P A;  4LXC A;  1GPR A;  3NYY A;  1F3G A;  1GLE F;  1AX3 A;  2GU1 A;  2F3G A;  3OUR B;  5B0H A;  5KVP A;  1O2F A;  1GGR A;  4RNZ A;  4QPB A;  4ZYB A;  2GPR A;  3UZ0 B;  1GLD F;  4JBW M;  2B13 A;  1GLC F;  1QWY A;  3SLU A;  3IT5 A;  1GLB F;  4QP5 A;  2B44 A;  1GLA F;  4BH5 A;  2MP0 B;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1GLEF

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations