1GPR | Genus

Total Genus 38

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	38
sequence length	158
structure length	158
Chain Sequence	EPLQNEIGEEVFVSPITGEIHPITDVPDQVFSGKMMGDGFAILPSEGIVVSPVRGKILNVFPTKHAIGLQSDGGREILIHFGIDTVSLKGEGFTSFVSEGDRVEPGQKLLEVDLDAVKPNVPSLMTPIVFTNLAEGETVSIKASGSVNREQEDIVKIE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 158 atoms

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1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

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158 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Phosphotransferase
source organism	Bacillus subtilis
publication title	An atomic model for protein-protein phosphoryl group transfer. pubmed rcsb
molecule keywords	GLUCOSE PERMEASE
total genus	38
structure length	158
sequence length	158
ec nomenclature	ec 2.7.1.69: Transferred entry: 2.7.1.191, 2.7.1.192, 2.7.1.193, 2.7.1.194, 2.7.1.195,
pdb deposition date	1991-09-25

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00358	PTS_EIIA_1	phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.70.70.10	Mainly Beta	Distorted Sandwich	Glucose Permease (Domain IIA)	Glucose Permease (Domain IIA)	1gprA00

2B0PA 1GLAF 4JBWM 4QPBA 3IT7A 1GLDF 1GLCF 1GPRA 4ZYBA 3UZ0B 3CSQA 2GU1A 4BH5A 1GLEF 3NYYA 2B13A 1GLBF 1GGRA 4RNYA 5B0HA 2HSIA 3IT5A 1QWYA 4QP5A 4RNZA 4LXCA 1F3GA 3SLUA 5KVPA 2F3GA 2GPRA 3TUFB 1O2FA 3OURB 2MP0B 1F3ZA 2B44A 1AX3A
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 2B0P A;  1GLA F;  4JBW M;  4QPB A;  3IT7 A;  1GLD F;  1GLC F;  1GPR A;  4ZYB A;  3UZ0 B;  3CSQ A;  2GU1 A;  4BH5 A;  1GLE F;  3NYY A;  2B13 A;  1GLB F;  1GGR A;  4RNY A;  5B0H A;  2HSI A;  3IT5 A;  1QWY A;  4QP5 A;  4RNZ A;  4LXC A;  1F3G A;  3SLU A;  5KVP A;  2F3G A;  2GPR A;  3TUF B;  1O2F A;  3OUR B;  2MP0 B;  1F3Z A;  2B44 A;  1AX3 A; 
#chains in the Genus database with same CATH topology
 2B0P A;  1GLA F;  4JBW M;  4QPB A;  3IT7 A;  1GLD F;  1GLC F;  1GPR A;  4ZYB A;  3UZ0 B;  3CSQ A;  2GU1 A;  4BH5 A;  1GLE F;  3NYY A;  2B13 A;  1GLB F;  1GGR A;  4RNY A;  5B0H A;  2HSI A;  3IT5 A;  1QWY A;  4QP5 A;  4RNZ A;  4LXC A;  1F3G A;  3SLU A;  5KVP A;  2F3G A;  2GPR A;  3TUF B;  1O2F A;  3OUR B;  2MP0 B;  1F3Z A;  2B44 A;  1AX3 A; 
#chains in the Genus database with same CATH homology
 2B0P A;  1GLA F;  4JBW M;  4QPB A;  3IT7 A;  1GLD F;  1GLC F;  1GPR A;  4ZYB A;  3UZ0 B;  3CSQ A;  2GU1 A;  4BH5 A;  1GLE F;  3NYY A;  2B13 A;  1GLB F;  1GGR A;  4RNY A;  5B0H A;  2HSI A;  3IT5 A;  1QWY A;  4QP5 A;  4RNZ A;  4LXC A;  1F3G A;  3SLU A;  5KVP A;  2F3G A;  2GPR A;  3TUF B;  1O2F A;  3OUR B;  2MP0 B;  1F3Z A;  2B44 A;  1AX3 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1GPRA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations