1GZI | Genus

Total Genus 16

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	16
sequence length	65
structure length	65
Chain Sequence	NQASVVANQLIPINTALTLVMMRSEVVTPVGIPAEDIPRLVSMQVNRAVPLGTTLMPDMVKGYAA

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 65 atoms

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65 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Ice-binding protein
source organism	Macrozoarces americanus
publication title	The Structure of Type III Antifreeze Protein from Ocean Pout rcsb
molecule keywords	HPLC-12 TYPE III ANTIFREEZE PROTEIN
total genus	16
structure length	65
sequence length	65
ec nomenclature
pdb deposition date	1996-10-25

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.90.1210.10	Alpha Beta	Alpha-Beta Complex	Type Iii Antifreeze Protein Isoform Hplc 12	Antifreeze-like/N-acetylneuraminic acid synthase C-terminal domain	1gziA00

1B7JA 1XUUA 2LX3A 3NLAA 2MSJA 1XUZA 3CM4A 7MSIA 1JABA 4NY6A 2LX2A 1MSIA 1MSJA 4UR6A 2AMEA 3RDNA 3FRNA 1HG7A 8AMEA 1C89A 1B7KA 4AMEA 9AMEA 1OPSA 1GZIA 3QF6A 4IPJA 1KDEA 2ZDRA 9MSIA 1KDFA 1WVOA 1VLIA 2JIAA 4IPIA 6MSIA 3G8RA 2SPGA 4MSIA 3MSIA 3AMEA 4UR4A 1EKLA 1C8AA 1UCSA 7AMEA 1AMEA 1B7IA 2MSIA 6AMEA 8MSIA 5MSIA 2WQPA
chains in the Genus database with same CATH superfamily

1B7JA 1XUUA 2LX3A 3NLAA 2MSJA 1XUZA 3CM4A 7MSIA 1JABA 4NY6A 2LX2A 1MSIA 1MSJA 4UR6A 2AMEA 3RDNA 3FRNA 1HG7A 8AMEA 1C89A 1B7KA 4AMEA 9AMEA 1OPSA 1GZIA 3QF6A 4IPJA 3K3SA 1KDEA 2ZDRA 9MSIA 1KDFA 1WVOA 1VLIA 2JIAA 4IPIA 6MSIA 3G8RA 2SPGA 4MSIA 3MSIA 3AMEA 4UR4A 1EKLA 1C8AA 1UCSA 7AMEA 1AMEA 1B7IA 2MSIA 6AMEA 8MSIA 5MSIA 2WQPA 3LAZA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 1B7J A;  1XUU A;  2LX3 A;  3NLA A;  2MSJ A;  1XUZ A;  3CM4 A;  7MSI A;  1JAB A;  4NY6 A;  2LX2 A;  1MSI A;  1MSJ A;  4UR6 A;  2AME A;  3RDN A;  3FRN A;  1HG7 A;  8AME A;  1C89 A;  1B7K A;  4AME A;  9AME A;  1OPS A;  1GZI A;  3QF6 A;  4IPJ A;  1KDE A;  2ZDR A;  9MSI A;  1KDF A;  1WVO A;  1VLI A;  2JIA A;  4IPI A;  6MSI A;  3G8R A;  2SPG A;  4MSI A;  3MSI A;  3AME A;  4UR4 A;  1EKL A;  1C8A A;  1UCS A;  7AME A;  1AME A;  1B7I A;  2MSI A;  6AME A;  8MSI A;  5MSI A;  2WQP A; 
#chains in the Genus database with same CATH topology
 1B7J A;  1XUU A;  2LX3 A;  3NLA A;  2MSJ A;  1XUZ A;  3CM4 A;  7MSI A;  1JAB A;  4NY6 A;  2LX2 A;  1MSI A;  1MSJ A;  4UR6 A;  2AME A;  3RDN A;  3FRN A;  1HG7 A;  8AME A;  1C89 A;  1B7K A;  4AME A;  9AME A;  1OPS A;  1GZI A;  3QF6 A;  4IPJ A;  3K3S A;  1KDE A;  2ZDR A;  9MSI A;  1KDF A;  1WVO A;  1VLI A;  2JIA A;  4IPI A;  6MSI A;  3G8R A;  2SPG A;  4MSI A;  3MSI A;  3AME A;  4UR4 A;  1EKL A;  1C8A A;  1UCS A;  7AME A;  1AME A;  1B7I A;  2MSI A;  6AME A;  8MSI A;  5MSI A;  2WQP A;  3LAZ A; 
#chains in the Genus database with same CATH homology
 1B7J A;  1XUU A;  2LX3 A;  3NLA A;  2MSJ A;  1XUZ A;  3CM4 A;  7MSI A;  1JAB A;  4NY6 A;  2LX2 A;  1MSI A;  1MSJ A;  4UR6 A;  2AME A;  3RDN A;  3FRN A;  1HG7 A;  8AME A;  1C89 A;  1B7K A;  4AME A;  9AME A;  1OPS A;  1GZI A;  3QF6 A;  4IPJ A;  1KDE A;  2ZDR A;  9MSI A;  1KDF A;  1WVO A;  1VLI A;  2JIA A;  4IPI A;  6MSI A;  3G8R A;  2SPG A;  4MSI A;  3MSI A;  3AME A;  4UR4 A;  1EKL A;  1C8A A;  1UCS A;  7AME A;  1AME A;  1B7I A;  2MSI A;  6AME A;  8MSI A;  5MSI A;  2WQP A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1GZIA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN