1JAB | Genus

Total Genus 14

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	14
sequence length	66
structure length	66
Chain Sequence	ANQASVVANQLIPINTALSLVMMRSEVVTPVGIPAEDIPRLVSMQVNRAVPLGTTLMPDMVKGYAA

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 66 atoms

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66 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Antifreeze protein
source organism	Macrozoarces americanus
publication title	Quantitative and qualitative analysis of type III antifreeze protein structure and function. pubmed doi rcsb
molecule keywords	PROTEIN (ANTIFREEZE PROTEIN TYPE III)
total genus	14
structure length	66
sequence length	66
ec nomenclature
pdb deposition date	1999-01-24

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.90.1210.10	Alpha Beta	Alpha-Beta Complex	Type Iii Antifreeze Protein Isoform Hplc 12	Antifreeze-like/N-acetylneuraminic acid synthase C-terminal domain	1jabA00

3QF6A 2ZDRA 1B7KA 1UCSA 6MSIA 4NY6A 1B7IA 4MSIA 1GZIA 3RDNA 7MSIA 4IPJA 8AMEA 2MSJA 9AMEA 9MSIA 1WVOA 3MSIA 3AMEA 3FRNA 5MSIA 1EKLA 3G8RA 1XUUA 4UR4A 1C8AA 2JIAA 6AMEA 1HG7A 2WQPA 2LX3A 2MSIA 3NLAA 4UR6A 1MSIA 1AMEA 3CM4A 1KDEA 2AMEA 7AMEA 1JABA 1OPSA 1B7JA 4IPIA 8MSIA 4AMEA 1MSJA 1VLIA 2LX2A 1KDFA 2SPGA 1XUZA 1C89A
chains in the Genus database with same CATH superfamily

3QF6A 2ZDRA 1B7KA 1UCSA 6MSIA 3K3SA 1B7IA 4NY6A 4MSIA 1GZIA 3RDNA 7MSIA 4IPJA 8AMEA 2MSJA 9AMEA 9MSIA 1WVOA 3MSIA 3AMEA 3FRNA 5MSIA 1EKLA 3G8RA 1XUUA 4UR4A 1C8AA 2JIAA 6AMEA 1HG7A 2WQPA 2LX3A 2MSIA 3NLAA 4UR6A 1MSIA 1AMEA 3CM4A 1KDEA 2AMEA 7AMEA 1JABA 1OPSA 1B7JA 4IPIA 8MSIA 4AMEA 3LAZA 1MSJA 1VLIA 2LX2A 1KDFA 2SPGA 1XUZA 1C89A
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 3QF6 A;  2ZDR A;  1B7K A;  1UCS A;  6MSI A;  4NY6 A;  1B7I A;  4MSI A;  1GZI A;  3RDN A;  7MSI A;  4IPJ A;  8AME A;  2MSJ A;  9AME A;  9MSI A;  1WVO A;  3MSI A;  3AME A;  3FRN A;  5MSI A;  1EKL A;  3G8R A;  1XUU A;  4UR4 A;  1C8A A;  2JIA A;  6AME A;  1HG7 A;  2WQP A;  2LX3 A;  2MSI A;  3NLA A;  4UR6 A;  1MSI A;  1AME A;  3CM4 A;  1KDE A;  2AME A;  7AME A;  1JAB A;  1OPS A;  1B7J A;  4IPI A;  8MSI A;  4AME A;  1MSJ A;  1VLI A;  2LX2 A;  1KDF A;  2SPG A;  1XUZ A;  1C89 A; 
#chains in the Genus database with same CATH topology
 3QF6 A;  2ZDR A;  1B7K A;  1UCS A;  6MSI A;  3K3S A;  1B7I A;  4NY6 A;  4MSI A;  1GZI A;  3RDN A;  7MSI A;  4IPJ A;  8AME A;  2MSJ A;  9AME A;  9MSI A;  1WVO A;  3MSI A;  3AME A;  3FRN A;  5MSI A;  1EKL A;  3G8R A;  1XUU A;  4UR4 A;  1C8A A;  2JIA A;  6AME A;  1HG7 A;  2WQP A;  2LX3 A;  2MSI A;  3NLA A;  4UR6 A;  1MSI A;  1AME A;  3CM4 A;  1KDE A;  2AME A;  7AME A;  1JAB A;  1OPS A;  1B7J A;  4IPI A;  8MSI A;  4AME A;  3LAZ A;  1MSJ A;  1VLI A;  2LX2 A;  1KDF A;  2SPG A;  1XUZ A;  1C89 A; 
#chains in the Genus database with same CATH homology
 3QF6 A;  2ZDR A;  1B7K A;  1UCS A;  6MSI A;  4NY6 A;  1B7I A;  4MSI A;  1GZI A;  3RDN A;  7MSI A;  4IPJ A;  8AME A;  2MSJ A;  9AME A;  9MSI A;  1WVO A;  3MSI A;  3AME A;  3FRN A;  5MSI A;  1EKL A;  3G8R A;  1XUU A;  4UR4 A;  1C8A A;  2JIA A;  6AME A;  1HG7 A;  2WQP A;  2LX3 A;  2MSI A;  3NLA A;  4UR6 A;  1MSI A;  1AME A;  3CM4 A;  1KDE A;  2AME A;  7AME A;  1JAB A;  1OPS A;  1B7J A;  4IPI A;  8MSI A;  4AME A;  1MSJ A;  1VLI A;  2LX2 A;  1KDF A;  2SPG A;  1XUZ A;  1C89 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1JABA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN