1KHY | Genus

Total Genus 47

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	47
sequence length	139
structure length	132
Chain Sequence	DRLTNKFQLALADAQSLALGHDNQFIEPLHLMSALLNQEGGSVSPLLTSAGINAGQLRTDINQALNRLPQVQPSQDLVRVLNLCDKLAQKRGDNFISSELFVLAALESRGTLADILKAAGATTANITQAIEQ

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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Viewer cachePut cache://localLOAD_/file/5cfb7967c10600e7ff79ecd4/pdb.gz

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The Resolver thinks Pdb

loadScript /static/js/j2s/core/corebio.z.js

Time for openFile(/file/5cfb7967c10600e7ff79ecd4/pdb.gz): 1856 ms

reading 132 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

Default Van der Waals type for model set to Jmol

132 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Time for creating model: 19 ms

Adding embedded #jmolscript: select ({0:131});backbone only;select *;

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Chaperone
source organism	Escherichia coli
publication title	The Crystal Structure of E. coli Hsp100 ClpB N Terminal Domain, Implication to Peptide Binding Function of ClpB rcsb
molecule keywords	CLPB PROTEIN
total genus	47
structure length	132
sequence length	139
chains with identical sequence	B, C, D
ec nomenclature
pdb deposition date	2001-12-01

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF02861	Clp_N	Clp amino terminal domain, pathogenicity island component

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.1780.10	Mainly Alpha	Orthogonal Bundle	Double Clp-N motif	Clp, N-terminal domain	1khyA00

4IRFA 1R6OA 3ZRJA 5GUIA 1R6QA 1KSFX 2Y1QA 4IODA 1KHYA 4Y0CA 3FESA 4Y0BA 4HH6A 3ZRIA 1LZWB 3WDDA 4P15A 3WDCA 3WDEA 1K6KA 1QVRA 1MG9B 3WDBA 2Y1RA 5HBNA 1MBUA 2K77A 4HH5A 1R6BX 1MBXA 1MBVA 3PXGA 1R6CX 4UQWA 3FH2A
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 4IRF A;  1R6O A;  3ZRJ A;  5GUI A;  1R6Q A;  1KSF X;  2Y1Q A;  4IOD A;  1KHY A;  4Y0C A;  3FES A;  4Y0B A;  4HH6 A;  3ZRI A;  1LZW B;  3WDD A;  4P15 A;  3WDC A;  3WDE A;  1K6K A;  1QVR A;  1MG9 B;  3WDB A;  2Y1R A;  5HBN A;  1MBU A;  2K77 A;  4HH5 A;  1R6B X;  1MBX A;  1MBV A;  3PXG A;  1R6C X;  4UQW A;  3FH2 A; 
#chains in the Genus database with same CATH topology
 4IRF A;  1R6O A;  3ZRJ A;  5GUI A;  1R6Q A;  1KSF X;  2Y1Q A;  4IOD A;  1KHY A;  4Y0C A;  3FES A;  4Y0B A;  4HH6 A;  3ZRI A;  1LZW B;  3WDD A;  4P15 A;  3WDC A;  3WDE A;  1K6K A;  1QVR A;  1MG9 B;  3WDB A;  2Y1R A;  5HBN A;  1MBU A;  2K77 A;  4HH5 A;  1R6B X;  1MBX A;  1MBV A;  3PXG A;  1R6C X;  4UQW A;  3FH2 A; 
#chains in the Genus database with same CATH homology
 4IRF A;  1R6O A;  3ZRJ A;  5GUI A;  1R6Q A;  1KSF X;  2Y1Q A;  4IOD A;  1KHY A;  4Y0C A;  3FES A;  4Y0B A;  4HH6 A;  3ZRI A;  1LZW B;  3WDD A;  4P15 A;  3WDC A;  3WDE A;  1K6K A;  1QVR A;  1MG9 B;  3WDB A;  2Y1R A;  5HBN A;  1MBU A;  2K77 A;  4HH5 A;  1R6B X;  1MBX A;  1MBV A;  3PXG A;  1R6C X;  4UQW A;  3FH2 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1KHYA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations