4P15A

Structure of the clpc n-terminal domain from an alkaliphilic bacillus lehensis g1 species
Total Genus 52
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
52
sequence length
146
structure length
137
Chain Sequence
GRFSERAQKVLALSQEEAIRLSHHNIGTEHILLGLIREGEGIAAKALQQLGLGSDKLQKEVEGLVGKSTPHYTPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGNN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structure of the ClpC N-terminal domain at 1.85 Angstroms resolution from an alkaliphilic Bacillus lehensis G1 species
rcsb
molecule tags Hydrolase
source organism Bacillus lehensis
molecule keywords Bacillus lehensis ClpC N-terminal domain
total genus 52
structure length 137
sequence length 146
ec nomenclature
pdb deposition date 2014-01-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02861 Clp_N Clp amino terminal domain, pathogenicity island component
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1780.10 Mainly Alpha Orthogonal Bundle Double Clp-N motif Clp, N-terminal domain 4p15A00
3ZRJA 3WDBA 1R6CX 4IODA 4HH5A 3PXGA 1R6QA 1QVRA 4Y0BA 2Y1QA 1KHYA 5HBNA 4IRFA 4UQWA 1MG9B 3ZRIA 3FH2A 1MBUA 1MBXA 1LZWB 1KSFX 3WDDA 3WDEA 5GUIA 1MBVA 1K6KA 3WDCA 1R6OA 4P15A 1R6BX 2Y1RA 2K77A 3FESA 4HH6A 4Y0CA
chains in the Genus database with same CATH superfamily
3ZRJA 3WDBA 1R6CX 4IODA 4HH5A 3PXGA 1R6QA 1QVRA 4Y0BA 2Y1QA 1KHYA 5HBNA 4IRFA 4UQWA 1MG9B 3ZRIA 3FH2A 1MBUA 1MBXA 1LZWB 1KSFX 3WDDA 3WDEA 5GUIA 1MBVA 1K6KA 3WDCA 1R6OA 4P15A 1R6BX 2Y1RA 2K77A 3FESA 4HH6A 4Y0CA
chains in the Genus database with same CATH topology
3ZRJA 3WDBA 1R6CX 4IODA 4HH5A 3PXGA 1R6QA 1QVRA 4Y0BA 2Y1QA 1KHYA 5HBNA 4IRFA 4UQWA 1MG9B 3ZRIA 3FH2A 1MBUA 1MBXA 1LZWB 1KSFX 3WDDA 3WDEA 5GUIA 1MBVA 1K6KA 3WDCA 1R6OA 4P15A 1R6BX 2Y1RA 2K77A 3FESA 4HH6A 4Y0CA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3ZRJ A;  3WDB A;  1R6C X;  4IOD A;  4HH5 A;  3PXG A;  1R6Q A;  1QVR A;  4Y0B A;  2Y1Q A;  1KHY A;  5HBN A;  4IRF A;  4UQW A;  1MG9 B;  3ZRI A;  3FH2 A;  1MBU A;  1MBX A;  1LZW B;  1KSF X;  3WDD A;  3WDE A;  5GUI A;  1MBV A;  1K6K A;  3WDC A;  1R6O A;  4P15 A;  1R6B X;  2Y1R A;  2K77 A;  3FES A;  4HH6 A;  4Y0C A; 
#chains in the Genus database with same CATH topology
 3ZRJ A;  3WDB A;  1R6C X;  4IOD A;  4HH5 A;  3PXG A;  1R6Q A;  1QVR A;  4Y0B A;  2Y1Q A;  1KHY A;  5HBN A;  4IRF A;  4UQW A;  1MG9 B;  3ZRI A;  3FH2 A;  1MBU A;  1MBX A;  1LZW B;  1KSF X;  3WDD A;  3WDE A;  5GUI A;  1MBV A;  1K6K A;  3WDC A;  1R6O A;  4P15 A;  1R6B X;  2Y1R A;  2K77 A;  3FES A;  4HH6 A;  4Y0C A; 
#chains in the Genus database with same CATH homology
 3ZRJ A;  3WDB A;  1R6C X;  4IOD A;  4HH5 A;  3PXG A;  1R6Q A;  1QVR A;  4Y0B A;  2Y1Q A;  1KHY A;  5HBN A;  4IRF A;  4UQW A;  1MG9 B;  3ZRI A;  3FH2 A;  1MBU A;  1MBX A;  1LZW B;  1KSF X;  3WDD A;  3WDE A;  5GUI A;  1MBV A;  1K6K A;  3WDC A;  1R6O A;  4P15 A;  1R6B X;  2Y1R A;  2K77 A;  3FES A;  4HH6 A;  4Y0C A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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