1MBVA

Crystal structure analysis of clpsn heterodimer tetragonal form
Total Genus 50
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
50
sequence length
142
structure length
142
Chain Sequence
MLNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALEACSVDLVALRQELEAFIEQTTPVLPASEEERDTQPTLSFQRVLQRAVFHVQSSGRNEVTGANVLVAIFSEQESQAAYLLRKHEVSRLDVVNFISHGT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal Structure of the Heterodimeric Complex of the Adaptor, ClpS, with the N-domain of AAA+ Chaperone ClpA
pubmed doi rcsb
molecule tags Protein binding
source organism Escherichia coli
molecule keywords ATP-Dependent clp Protease ATP-Binding Subunit clp A
total genus 50
structure length 142
sequence length 142
ec nomenclature
pdb deposition date 2002-08-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02861 Clp_N Clp amino terminal domain, pathogenicity island component
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1780.10 Mainly Alpha Orthogonal Bundle Double Clp-N motif Clp, N-terminal domain 1mbvA00
1R6BX 4IODA 1MBVA 2Y1RA 2K77A 5HBNA 4IRFA 3WDBA 1MBXA 1K6KA 1KHYA 2Y1QA 4Y0CA 1KSFX 1MBUA 3PXGA 3WDCA 4HH5A 3ZRIA 4Y0BA 5GUIA 3ZRJA 1QVRA 1LZWB 4UQWA 3FESA 1R6OA 1R6CX 1R6QA 4P15A 3WDEA 1MG9B 3WDDA 3FH2A 4HH6A
chains in the Genus database with same CATH superfamily
1R6BX 4IODA 1MBVA 2Y1RA 2K77A 5HBNA 4IRFA 3WDBA 1MBXA 1K6KA 1KHYA 2Y1QA 4Y0CA 1KSFX 1MBUA 3PXGA 3WDCA 4HH5A 3ZRIA 4Y0BA 5GUIA 3ZRJA 1QVRA 1LZWB 4UQWA 3FESA 1R6OA 1R6CX 1R6QA 4P15A 3WDEA 1MG9B 3WDDA 3FH2A 4HH6A
chains in the Genus database with same CATH topology
1R6BX 4IODA 1MBVA 2Y1RA 2K77A 5HBNA 4IRFA 3WDBA 1MBXA 1K6KA 1KHYA 2Y1QA 4Y0CA 1KSFX 1MBUA 3PXGA 3WDCA 4HH5A 3ZRIA 4Y0BA 5GUIA 3ZRJA 1QVRA 1LZWB 4UQWA 3FESA 1R6OA 1R6CX 1R6QA 4P15A 3WDEA 1MG9B 3WDDA 3FH2A 4HH6A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1R6B X;  4IOD A;  1MBV A;  2Y1R A;  2K77 A;  5HBN A;  4IRF A;  3WDB A;  1MBX A;  1K6K A;  1KHY A;  2Y1Q A;  4Y0C A;  1KSF X;  1MBU A;  3PXG A;  3WDC A;  4HH5 A;  3ZRI A;  4Y0B A;  5GUI A;  3ZRJ A;  1QVR A;  1LZW B;  4UQW A;  3FES A;  1R6O A;  1R6C X;  1R6Q A;  4P15 A;  3WDE A;  1MG9 B;  3WDD A;  3FH2 A;  4HH6 A; 
#chains in the Genus database with same CATH topology
 1R6B X;  4IOD A;  1MBV A;  2Y1R A;  2K77 A;  5HBN A;  4IRF A;  3WDB A;  1MBX A;  1K6K A;  1KHY A;  2Y1Q A;  4Y0C A;  1KSF X;  1MBU A;  3PXG A;  3WDC A;  4HH5 A;  3ZRI A;  4Y0B A;  5GUI A;  3ZRJ A;  1QVR A;  1LZW B;  4UQW A;  3FES A;  1R6O A;  1R6C X;  1R6Q A;  4P15 A;  3WDE A;  1MG9 B;  3WDD A;  3FH2 A;  4HH6 A; 
#chains in the Genus database with same CATH homology
 1R6B X;  4IOD A;  1MBV A;  2Y1R A;  2K77 A;  5HBN A;  4IRF A;  3WDB A;  1MBX A;  1K6K A;  1KHY A;  2Y1Q A;  4Y0C A;  1KSF X;  1MBU A;  3PXG A;  3WDC A;  4HH5 A;  3ZRI A;  4Y0B A;  5GUI A;  3ZRJ A;  1QVR A;  1LZW B;  4UQW A;  3FES A;  1R6O A;  1R6C X;  1R6Q A;  4P15 A;  3WDE A;  1MG9 B;  3WDD A;  3FH2 A;  4HH6 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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