The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
24
|
sequence length |
213
|
structure length |
213
|
Chain Sequence |
QNPMTVAHMWFDNQIHEADTTENQSGVSFDKTSATWFALSRIAGLCNRAVFQANQENLPILKRAVAGDASESALLKCIEVCCGSVMEMREKYTKIVEIPFNSTNKYQLSIHKNPNASEPKHLLVMKGAPERILDRCSSILLHGKEQPLDEELKDAFQNAYLELGGLGERVLGFCHLLLPDEQFPEGFQFDTDEVNFPVDNLCFVGLISMIDPP
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
ATP-induced conformational changes of the nucleotide-binding domain of Na,K-ATPase
pubmed doi rcsb |
| molecule tags |
Hydrolase
|
| source organism |
Rattus norvegicus
|
| molecule keywords |
Sodium/Potassium-transporting ATPase alpha-1 chain
|
| total genus |
24
|
| structure length |
213
|
| sequence length |
213
|
| ec nomenclature |
ec
7.2.2.13: Na(+)/K(+)-exchanging ATPase. |
| pdb deposition date | 2002-09-08 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF13246 | Cation_ATPase | Cation transport ATPase (P-type) |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 3-Layer(aba) Sandwich | Calcium-transporting ATPase, cytoplasmic domain N | Calcium-transporting ATPase, cytoplasmic domain N |
#chains in the Genus database with same CATH superfamily 5AVQ A; 5A3R A; 3WGV A; 2YJ4 A; 3FPB A; 5AW3 A; 3B9R A; 2OA0 A; 3AR8 A; 4BEW A; 3AR2 A; 4RET A; 3GWI A; 4XOU A; 3WGU A; 4HYT A; 1IWO A; 3B9B A; 4KYT A; 2YJ3 A; 5A3Q A; 2ZBE A; 2A29 A; 5AVX A; 3A3Y A; 1U7Q A; 2ZBD A; 4RES A; 1Q3I A; 5AVZ A; 3NAM A; 2AGV A; 2IYE A; 1SVJ A; 3W5C A; 5AW6 A; 1XP5 A; 2YJ6 A; 5AW0 A; 3SKX A; 1T5T A; 2ZBF A; 2B8E A; 2KMV A; 3AR3 A; 5AVT A; 2DQS A; 2YFY A; 3A1E A; 3BA6 A; 5AVS A; 3A1D A; 5AVW A; 2C9M A; 5AVU A; 3NAL A; 3KDP A; 3N5K A; 3W5B A; 4NAB A; 1WPG A; 4H1W A; 4BEV A; 4UMV A; 2ARF A; 2EAR A; 3N8G A; 5AW5 A; 3W5D A; 2C88 A; 4UU1 A; 3A1C A; 3B8E A; 1VFP A; 4Y3U A; 3RFU A; 5AW9 A; 4YCL A; 2C8K A; 3AR7 A; 2BY4 A; 4YCM A; 2ZBG A; 4BBJ A; 5AW8 A; 1T5S A; 3FGO A; 5AVV A; 1SU4 A; 4XE5 A; 5AW2 A; 2EAU A; 3NAN A; 2YJ5 A; 5AW7 A; 3SKY A; 4UU0 A; 2C8L A; 4J2T A; 4YCN A; 5A3S A; 3AR9 A; 3AR6 A; 1MO8 A; 3AR4 A; 3TLM A; 2KMX A; 2O9J A; 2ZXE A; 2A00 A; 5AW4 A; 4BYG A; 1MO7 A; 3J7T A; 2EAT A; 5AVY A; 5AW1 A; 5AVR A; 3W5A A; 3FPS A; 3AR5 A; #chains in the Genus database with same CATH topology 5AVQ A; 5A3R A; 3WGV A; 2YJ4 A; 3FPB A; 5AW3 A; 3B9R A; 2OA0 A; 3AR8 A; 4BEW A; 3AR2 A; 4RET A; 3GWI A; 4XOU A; 3WGU A; 4HYT A; 1IWO A; 3B9B A; 4KYT A; 2YJ3 A; 5A3Q A; 2ZBE A; 2A29 A; 5AVX A; 3A3Y A; 1U7Q A; 2ZBD A; 4RES A; 1Q3I A; 5AVZ A; 3NAM A; 2AGV A; 2IYE A; 1SVJ A; 3W5C A; 5AW6 A; 1XP5 A; 2YJ6 A; 5AW0 A; 3SKX A; 1T5T A; 2ZBF A; 2B8E A; 2KMV A; 3AR3 A; 5AVT A; 2DQS A; 2YFY A; 3A1E A; 3BA6 A; 5AVS A; 3A1D A; 5AVW A; 2C9M A; 5AVU A; 3NAL A; 3KDP A; 3N5K A; 3W5B A; 4NAB A; 1WPG A; 4H1W A; 4BEV A; 4UMV A; 2ARF A; 2EAR A; 3N8G A; 5AW5 A; 3W5D A; 2C88 A; 4UU1 A; 3A1C A; 3B8E A; 1VFP A; 4Y3U A; 3RFU A; 5AW9 A; 4YCL A; 2C8K A; 3AR7 A; 2BY4 A; 4YCM A; 2ZBG A; 4BBJ A; 5AW8 A; 1T5S A; 3FGO A; 5AVV A; 1SU4 A; 4XE5 A; 5AW2 A; 2EAU A; 3NAN A; 2YJ5 A; 5AW7 A; 3SKY A; 4UU0 A; 2C8L A; 4J2T A; 4YCN A; 5A3S A; 3AR9 A; 3AR6 A; 1MO8 A; 3AR4 A; 3TLM A; 2KMX A; 2O9J A; 2ZXE A; 2A00 A; 5AW4 A; 4BYG A; 1MO7 A; 3J7T A; 2EAT A; 5AVY A; 5AW1 A; 5AVR A; 3W5A A; 3FPS A; 3AR5 A; #chains in the Genus database with same CATH homology 5AVQ A; 5A3R A; 3WGV A; 2YJ4 A; 3FPB A; 5AW3 A; 3B9R A; 2OA0 A; 3AR8 A; 4BEW A; 3AR2 A; 4RET A; 3GWI A; 4XOU A; 3WGU A; 4HYT A; 1IWO A; 3B9B A; 4KYT A; 2YJ3 A; 5A3Q A; 2ZBE A; 2A29 A; 5AVX A; 3A3Y A; 1U7Q A; 2ZBD A; 4RES A; 1Q3I A; 5AVZ A; 3NAM A; 2AGV A; 2IYE A; 1SVJ A; 3W5C A; 5AW6 A; 1XP5 A; 2YJ6 A; 5AW0 A; 3SKX A; 1T5T A; 2ZBF A; 2B8E A; 2KMV A; 3AR3 A; 5AVT A; 2DQS A; 2YFY A; 3A1E A; 3BA6 A; 5AVS A; 3A1D A; 5AVW A; 2C9M A; 5AVU A; 3NAL A; 3KDP A; 3N5K A; 3W5B A; 4NAB A; 1WPG A; 4H1W A; 4BEV A; 4UMV A; 2ARF A; 2EAR A; 3N8G A; 5AW5 A; 3W5D A; 2C88 A; 4UU1 A; 3A1C A; 3B8E A; 1VFP A; 4Y3U A; 3RFU A; 5AW9 A; 4YCL A; 2C8K A; 3AR7 A; 2BY4 A; 4YCM A; 2ZBG A; 4BBJ A; 5AW8 A; 1T5S A; 3FGO A; 5AVV A; 1SU4 A; 4XE5 A; 5AW2 A; 2EAU A; 3NAN A; 2YJ5 A; 5AW7 A; 3SKY A; 4UU0 A; 2C8L A; 4J2T A; 4YCN A; 5A3S A; 3AR9 A; 3AR6 A; 1MO8 A; 3AR4 A; 3TLM A; 2KMX A; 2O9J A; 2ZXE A; 2A00 A; 5AW4 A; 4BYG A; 1MO7 A; 3J7T A; 2EAT A; 5AVY A; 5AW1 A; 5AVR A; 3W5A A; 3FPS A; 3AR5 A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
