1MSI | Genus

Total Genus 15

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	15
sequence length	66
structure length	66
Chain Sequence	AAQASVVANQLIPINTALTLVMMRSEVVTPVGIPAEDIPRLVSMQVNRAVPLGTTLMPDMVKGYAA

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Antifreeze protein
source organism	Macrozoarces americanus
publication title	Structural basis for the binding of a globular antifreeze protein to ice. pubmed doi rcsb
molecule keywords	TYPE III ANTIFREEZE PROTEIN ISOFORM HPLC 12
total genus	15
structure length	66
sequence length	66
ec nomenclature
pdb deposition date	1996-10-08

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.90.1210.10	Alpha Beta	Alpha-Beta Complex	Type Iii Antifreeze Protein Isoform Hplc 12	Antifreeze-like/N-acetylneuraminic acid synthase C-terminal domain	1msiA00

5MSIA 3MSIA 3G8RA 2WQPA 2MSIA 1OPSA 8AMEA 1HG7A 2MSJA 4NY6A 1AMEA 9MSIA 1GZIA 1XUUA 4UR6A 4AMEA 1KDFA 2ZDRA 2AMEA 1MSIA 1UCSA 1KDEA 8MSIA 1B7KA 7MSIA 3RDNA 1EKLA 1MSJA 1VLIA 3CM4A 6AMEA 1WVOA 9AMEA 4MSIA 1XUZA 2LX3A 3QF6A 7AMEA 2SPGA 4IPIA 2LX2A 1C89A 1B7JA 3NLAA 1B7IA 6MSIA 4IPJA 2JIAA 3AMEA 1JABA 4UR4A 1C8AA 3FRNA
chains in the Genus database with same CATH superfamily

5MSIA 3MSIA 3G8RA 3K3SA 2WQPA 2MSIA 1OPSA 8AMEA 1HG7A 2MSJA 4NY6A 1AMEA 9MSIA 1GZIA 1XUUA 4UR6A 4AMEA 1KDFA 2ZDRA 2AMEA 1MSIA 1UCSA 1KDEA 8MSIA 1B7KA 7MSIA 3RDNA 1EKLA 1MSJA 1VLIA 3CM4A 6AMEA 1WVOA 9AMEA 4MSIA 1XUZA 2LX3A 3QF6A 7AMEA 2SPGA 4IPIA 2LX2A 3LAZA 1C89A 1B7JA 3NLAA 1B7IA 6MSIA 4IPJA 2JIAA 3AMEA 1JABA 4UR4A 1C8AA 3FRNA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 5MSI A;  3MSI A;  3G8R A;  2WQP A;  2MSI A;  1OPS A;  8AME A;  1HG7 A;  2MSJ A;  4NY6 A;  1AME A;  9MSI A;  1GZI A;  1XUU A;  4UR6 A;  4AME A;  1KDF A;  2ZDR A;  2AME A;  1MSI A;  1UCS A;  1KDE A;  8MSI A;  1B7K A;  7MSI A;  3RDN A;  1EKL A;  1MSJ A;  1VLI A;  3CM4 A;  6AME A;  1WVO A;  9AME A;  4MSI A;  1XUZ A;  2LX3 A;  3QF6 A;  7AME A;  2SPG A;  4IPI A;  2LX2 A;  1C89 A;  1B7J A;  3NLA A;  1B7I A;  6MSI A;  4IPJ A;  2JIA A;  3AME A;  1JAB A;  4UR4 A;  1C8A A;  3FRN A; 
#chains in the Genus database with same CATH topology
 5MSI A;  3MSI A;  3G8R A;  3K3S A;  2WQP A;  2MSI A;  1OPS A;  8AME A;  1HG7 A;  2MSJ A;  4NY6 A;  1AME A;  9MSI A;  1GZI A;  1XUU A;  4UR6 A;  4AME A;  1KDF A;  2ZDR A;  2AME A;  1MSI A;  1UCS A;  1KDE A;  8MSI A;  1B7K A;  7MSI A;  3RDN A;  1EKL A;  1MSJ A;  1VLI A;  3CM4 A;  6AME A;  1WVO A;  9AME A;  4MSI A;  1XUZ A;  2LX3 A;  3QF6 A;  7AME A;  2SPG A;  4IPI A;  2LX2 A;  3LAZ A;  1C89 A;  1B7J A;  3NLA A;  1B7I A;  6MSI A;  4IPJ A;  2JIA A;  3AME A;  1JAB A;  4UR4 A;  1C8A A;  3FRN A; 
#chains in the Genus database with same CATH homology
 5MSI A;  3MSI A;  3G8R A;  2WQP A;  2MSI A;  1OPS A;  8AME A;  1HG7 A;  2MSJ A;  4NY6 A;  1AME A;  9MSI A;  1GZI A;  1XUU A;  4UR6 A;  4AME A;  1KDF A;  2ZDR A;  2AME A;  1MSI A;  1UCS A;  1KDE A;  8MSI A;  1B7K A;  7MSI A;  3RDN A;  1EKL A;  1MSJ A;  1VLI A;  3CM4 A;  6AME A;  1WVO A;  9AME A;  4MSI A;  1XUZ A;  2LX3 A;  3QF6 A;  7AME A;  2SPG A;  4IPI A;  2LX2 A;  1C89 A;  1B7J A;  3NLA A;  1B7I A;  6MSI A;  4IPJ A;  2JIA A;  3AME A;  1JAB A;  4UR4 A;  1C8A A;  3FRN A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1MSIA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

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