1O2F | Genus

Total Genus 35

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	35
sequence length	150
structure length	150
Chain Sequence	TIEIIAPLSGEIVNIEDVPDVVFAEKIVGDGIAIKPTGNKMVAPVDGTIGKIFETNHAFSIESDSGVELFVHFGIDTVELKGEGFKRIAEEGQRVKVGDTVIEFDLPLLEEKAKSTLTPVVISNMDEIKELIKLSGSVTVGETPVIRIKK

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 150 atoms

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1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

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150 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Transferase
source organism	Escherichia coli
publication title	Solution Structure of the Phosphoryl Transfer Complex between the Signal-transducing Protein IIAGlucose and the Cytoplasmic Domain of the Glucose Transporter IICBGlucose of the Escherichia coli Glucose Phosphotransferase System. pubmed doi rcsb
molecule keywords	PTS system, glucose-specific IIA component
total genus	35
structure length	150
sequence length	150
ec nomenclature
pdb deposition date	2003-03-11

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00358	PTS_EIIA_1	phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.70.70.10	Mainly Beta	Distorted Sandwich	Glucose Permease (Domain IIA)	Glucose Permease (Domain IIA)	1o2fA00

1AX3A 2F3GA 1F3ZA 2GU1A 4QPBA 4QP5A 1GLDF 3UZ0B 3NYYA 2GPRA 1GLAF 3SLUA 1QWYA 3IT5A 2B44A 5KVPA 2B13A 1GLEF 1O2FA 3CSQA 1F3GA 4LXCA 3OURB 4BH5A 5B0HA 2HSIA 2B0PA 4RNYA 4RNZA 2MP0B 4JBWM 1GPRA 1GLBF 1GGRA 4ZYBA 3IT7A 3TUFB 1GLCF
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 1AX3 A;  2F3G A;  1F3Z A;  2GU1 A;  4QPB A;  4QP5 A;  1GLD F;  3UZ0 B;  3NYY A;  2GPR A;  1GLA F;  3SLU A;  1QWY A;  3IT5 A;  2B44 A;  5KVP A;  2B13 A;  1GLE F;  1O2F A;  3CSQ A;  1F3G A;  4LXC A;  3OUR B;  4BH5 A;  5B0H A;  2HSI A;  2B0P A;  4RNY A;  4RNZ A;  2MP0 B;  4JBW M;  1GPR A;  1GLB F;  1GGR A;  4ZYB A;  3IT7 A;  3TUF B;  1GLC F; 
#chains in the Genus database with same CATH topology
 1AX3 A;  2F3G A;  1F3Z A;  2GU1 A;  4QPB A;  4QP5 A;  1GLD F;  3UZ0 B;  3NYY A;  2GPR A;  1GLA F;  3SLU A;  1QWY A;  3IT5 A;  2B44 A;  5KVP A;  2B13 A;  1GLE F;  1O2F A;  3CSQ A;  1F3G A;  4LXC A;  3OUR B;  4BH5 A;  5B0H A;  2HSI A;  2B0P A;  4RNY A;  4RNZ A;  2MP0 B;  4JBW M;  1GPR A;  1GLB F;  1GGR A;  4ZYB A;  3IT7 A;  3TUF B;  1GLC F; 
#chains in the Genus database with same CATH homology
 1AX3 A;  2F3G A;  1F3Z A;  2GU1 A;  4QPB A;  4QP5 A;  1GLD F;  3UZ0 B;  3NYY A;  2GPR A;  1GLA F;  3SLU A;  1QWY A;  3IT5 A;  2B44 A;  5KVP A;  2B13 A;  1GLE F;  1O2F A;  3CSQ A;  1F3G A;  4LXC A;  3OUR B;  4BH5 A;  5B0H A;  2HSI A;  2B0P A;  4RNY A;  4RNZ A;  2MP0 B;  4JBW M;  1GPR A;  1GLB F;  1GGR A;  4ZYB A;  3IT7 A;  3TUF B;  1GLC F;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1O2FA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations