1OPS | Genus

Total Genus 15

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	15
sequence length	64
structure length	64
Chain Sequence	SQSVVATQLIPMNTALTPAMMEGKVTNPIGIPFAEMSQLVGKQVNTPVAKGQTLMPNMVKTYAA

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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reading 64 atoms

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Antifreeze protein
publication title	Identification of the ice-binding surface on a type III antifreeze protein with a "flatness function" algorithm. pubmed rcsb
molecule keywords	TYPE III ANTIFREEZE PROTEIN
total genus	15
structure length	64
sequence length	64
ec nomenclature
pdb deposition date	1997-11-17

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF08666	SAF	SAF domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.90.1210.10	Alpha Beta	Alpha-Beta Complex	Type Iii Antifreeze Protein Isoform Hplc 12	Antifreeze-like/N-acetylneuraminic acid synthase C-terminal domain	1opsA00

4MSIA 1AMEA 1HG7A 1MSIA 1WVOA 6MSIA 3AMEA 1OPSA 2AMEA 3MSIA 1EKLA 1UCSA 2LX3A 5MSIA 7AMEA 4NY6A 8AMEA 9AMEA 2MSJA 2ZDRA 1B7IA 3FRNA 4UR6A 1C89A 1VLIA 2JIAA 1B7JA 2MSIA 2SPGA 1B7KA 1JABA 1KDEA 9MSIA 1C8AA 1XUUA 6AMEA 4IPIA 1GZIA 2LX2A 2WQPA 3CM4A 4IPJA 4UR4A 3G8RA 1KDFA 8MSIA 3QF6A 3RDNA 4AMEA 7MSIA 1XUZA 1MSJA 3NLAA
chains in the Genus database with same CATH superfamily

4MSIA 1AMEA 1HG7A 1MSIA 1WVOA 3K3SA 6MSIA 3AMEA 1OPSA 2AMEA 3MSIA 1EKLA 1UCSA 2LX3A 5MSIA 7AMEA 4NY6A 8AMEA 9AMEA 2MSJA 2ZDRA 1B7IA 3FRNA 4UR6A 3LAZA 1C89A 1VLIA 2JIAA 1B7JA 2MSIA 2SPGA 1B7KA 1JABA 1KDEA 9MSIA 1C8AA 1XUUA 6AMEA 4IPIA 1GZIA 2LX2A 2WQPA 3CM4A 4IPJA 4UR4A 3G8RA 1KDFA 8MSIA 3QF6A 3RDNA 4AMEA 7MSIA 1XUZA 1MSJA 3NLAA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 4MSI A;  1AME A;  1HG7 A;  1MSI A;  1WVO A;  6MSI A;  3AME A;  1OPS A;  2AME A;  3MSI A;  1EKL A;  1UCS A;  2LX3 A;  5MSI A;  7AME A;  4NY6 A;  8AME A;  9AME A;  2MSJ A;  2ZDR A;  1B7I A;  3FRN A;  4UR6 A;  1C89 A;  1VLI A;  2JIA A;  1B7J A;  2MSI A;  2SPG A;  1B7K A;  1JAB A;  1KDE A;  9MSI A;  1C8A A;  1XUU A;  6AME A;  4IPI A;  1GZI A;  2LX2 A;  2WQP A;  3CM4 A;  4IPJ A;  4UR4 A;  3G8R A;  1KDF A;  8MSI A;  3QF6 A;  3RDN A;  4AME A;  7MSI A;  1XUZ A;  1MSJ A;  3NLA A; 
#chains in the Genus database with same CATH topology
 4MSI A;  1AME A;  1HG7 A;  1MSI A;  1WVO A;  3K3S A;  6MSI A;  3AME A;  1OPS A;  2AME A;  3MSI A;  1EKL A;  1UCS A;  2LX3 A;  5MSI A;  7AME A;  4NY6 A;  8AME A;  9AME A;  2MSJ A;  2ZDR A;  1B7I A;  3FRN A;  4UR6 A;  3LAZ A;  1C89 A;  1VLI A;  2JIA A;  1B7J A;  2MSI A;  2SPG A;  1B7K A;  1JAB A;  1KDE A;  9MSI A;  1C8A A;  1XUU A;  6AME A;  4IPI A;  1GZI A;  2LX2 A;  2WQP A;  3CM4 A;  4IPJ A;  4UR4 A;  3G8R A;  1KDF A;  8MSI A;  3QF6 A;  3RDN A;  4AME A;  7MSI A;  1XUZ A;  1MSJ A;  3NLA A; 
#chains in the Genus database with same CATH homology
 4MSI A;  1AME A;  1HG7 A;  1MSI A;  1WVO A;  6MSI A;  3AME A;  1OPS A;  2AME A;  3MSI A;  1EKL A;  1UCS A;  2LX3 A;  5MSI A;  7AME A;  4NY6 A;  8AME A;  9AME A;  2MSJ A;  2ZDR A;  1B7I A;  3FRN A;  4UR6 A;  1C89 A;  1VLI A;  2JIA A;  1B7J A;  2MSI A;  2SPG A;  1B7K A;  1JAB A;  1KDE A;  9MSI A;  1C8A A;  1XUU A;  6AME A;  4IPI A;  1GZI A;  2LX2 A;  2WQP A;  3CM4 A;  4IPJ A;  4UR4 A;  3G8R A;  1KDF A;  8MSI A;  3QF6 A;  3RDN A;  4AME A;  7MSI A;  1XUZ A;  1MSJ A;  3NLA A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1OPSA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations