1R6C | Genus

Total Genus 55

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	55
sequence length	142
structure length	142
Chain Sequence	MLNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALEACSVDLVALRQELEAFIEQTTPVLPASEEERDTQPTLSFQRVLQRAVFHVQSSGRNEVTGANVLVAIFSEQESQAAYLLRKHEVSRLDVVNFISHGT

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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Time for openFile(/file/5cfbec5a7649fdb232602bc3/pdb.gz): 1904 ms

reading 142 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

Default Van der Waals type for model set to Jmol

142 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Time for creating model: 19 ms

Adding embedded #jmolscript: select ({0:141});backbone only;select *;

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Hydrolase
source organism	Escherichia coli
publication title	Crystallographic investigation of peptide binding sites in the N-domain of the ClpA chaperone pubmed doi rcsb
molecule keywords	ATP-dependent Clp protease ATP-binding subunit clpA
total genus	55
structure length	142
sequence length	142
ec nomenclature
pdb deposition date	2003-10-15

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
X	PF02861	Clp_N	Clp amino terminal domain, pathogenicity island component

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.1780.10	Mainly Alpha	Orthogonal Bundle	Double Clp-N motif	Clp, N-terminal domain	1r6cX00

5HBNA 3ZRJA 1K6KA 4Y0CA 1R6QA 3WDBA 1MBUA 1R6BX 3FH2A 1LZWB 3PXGA 2Y1RA 1R6OA 4IODA 1KSFX 1MG9B 1QVRA 3WDDA 3ZRIA 1KHYA 4UQWA 4HH5A 1MBXA 1MBVA 2K77A 3WDEA 3FESA 4IRFA 4Y0BA 3WDCA 4P15A 4HH6A 1R6CX 2Y1QA 5GUIA
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 5HBN A;  3ZRJ A;  1K6K A;  4Y0C A;  1R6Q A;  3WDB A;  1MBU A;  1R6B X;  3FH2 A;  1LZW B;  3PXG A;  2Y1R A;  1R6O A;  4IOD A;  1KSF X;  1MG9 B;  1QVR A;  3WDD A;  3ZRI A;  1KHY A;  4UQW A;  4HH5 A;  1MBX A;  1MBV A;  2K77 A;  3WDE A;  3FES A;  4IRF A;  4Y0B A;  3WDC A;  4P15 A;  4HH6 A;  1R6C X;  2Y1Q A;  5GUI A; 
#chains in the Genus database with same CATH topology
 5HBN A;  3ZRJ A;  1K6K A;  4Y0C A;  1R6Q A;  3WDB A;  1MBU A;  1R6B X;  3FH2 A;  1LZW B;  3PXG A;  2Y1R A;  1R6O A;  4IOD A;  1KSF X;  1MG9 B;  1QVR A;  3WDD A;  3ZRI A;  1KHY A;  4UQW A;  4HH5 A;  1MBX A;  1MBV A;  2K77 A;  3WDE A;  3FES A;  4IRF A;  4Y0B A;  3WDC A;  4P15 A;  4HH6 A;  1R6C X;  2Y1Q A;  5GUI A; 
#chains in the Genus database with same CATH homology
 5HBN A;  3ZRJ A;  1K6K A;  4Y0C A;  1R6Q A;  3WDB A;  1MBU A;  1R6B X;  3FH2 A;  1LZW B;  3PXG A;  2Y1R A;  1R6O A;  4IOD A;  1KSF X;  1MG9 B;  1QVR A;  3WDD A;  3ZRI A;  1KHY A;  4UQW A;  4HH5 A;  1MBX A;  1MBV A;  2K77 A;  3WDE A;  3FES A;  4IRF A;  4Y0B A;  3WDC A;  4P15 A;  4HH6 A;  1R6C X;  2Y1Q A;  5GUI A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1R6CX

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations