1UB1A

Solution structure of the matrix attachment region-binding domain of chicken mecp2
Total Genus 4
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
4
sequence length
125
structure length
125
Chain Sequence
APAVPEASASPKQRRSIIRDRGPMYDDPTLPEGWTRKLKQRKSGRSAGKYDVYLINPQGKAFRSKVELIAYFEKVGDTSLDPNDFDFTVTGRGSPSRREQRPPKKAKSPKSPGSGRGRGRPKGSG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Solution structure of the matrix attachment region-binding domain of chicken MeCP2
pubmed doi rcsb
molecule keywords attachment region binding protein
molecule tags Transcription
source organism Gallus gallus
total genus 4
structure length 125
sequence length 125
ec nomenclature
pdb deposition date 2003-03-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01429 MBD Methyl-CpG binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.890.10 Alpha Beta 2-Layer Sandwich Methyl-cpg-binding Protein 2; Chain A Methyl-cpg-binding Protein 2; Chain A 1ub1A00
5BT2A 3VYBA 3VYQA 1IG4A 2MB7A 3VXVA 3VXXA 1QK9A 1UB1A 4LG7A 3C2IA 2MOEA 1D9NA 2KY8A
chains in the Genus database with same CATH superfamily
5BT2A 3VYBA 3VYQA 1IG4A 2MB7A 3VXVA 3VXXA 1QK9A 1UB1A 4LG7A 3C2IA 2MOEA 1D9NA 2KY8A
chains in the Genus database with same CATH topology
5BT2A 3VYBA 3VYQA 1IG4A 2MB7A 3VXVA 3VXXA 1QK9A 1UB1A 4LG7A 3C2IA 2MOEA 1D9NA 2KY8A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5BT2 A;  3VYB A;  3VYQ A;  1IG4 A;  2MB7 A;  3VXV A;  3VXX A;  1QK9 A;  1UB1 A;  4LG7 A;  3C2I A;  2MOE A;  1D9N A;  2KY8 A; 
#chains in the Genus database with same CATH topology
 5BT2 A;  3VYB A;  3VYQ A;  1IG4 A;  2MB7 A;  3VXV A;  3VXX A;  1QK9 A;  1UB1 A;  4LG7 A;  3C2I A;  2MOE A;  1D9N A;  2KY8 A; 
#chains in the Genus database with same CATH homology
 5BT2 A;  3VYB A;  3VYQ A;  1IG4 A;  2MB7 A;  3VXV A;  3VXX A;  1QK9 A;  1UB1 A;  4LG7 A;  3C2I A;  2MOE A;  1D9N A;  2KY8 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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