3C2IA

The crystal structure of methyl-cpg binding domain of human mecp2 in complex with a methylated dna sequence from bdnf
Total Genus 10
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
10
sequence length
72
structure length
72
Chain Sequence
RGPMYDDPTLPEGWTRKLKQRKSGRSAGKYDVYLINPQGKAFRSKVELIMYFEKVGDTSLDPNDFDFTVTGR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title MeCP2 binding to DNA depends upon hydration at methyl-CpG
pubmed doi rcsb
molecule keywords Methyl-CpG-binding protein 2
molecule tags Transcription regulator
source organism Homo sapiens
total genus 10
structure length 72
sequence length 72
ec nomenclature
pdb deposition date 2008-01-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01429 MBD Methyl-CpG binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.890.10 Alpha Beta 2-Layer Sandwich Methyl-cpg-binding Protein 2; Chain A Methyl-cpg-binding Protein 2; Chain A 3c2iA01
1D9NA 2KY8A 3VXVA 3VYBA 1UB1A 4LG7A 3C2IA 3VXXA 2MOEA 2MB7A 3VYQA 5BT2A 1IG4A 1QK9A
chains in the Genus database with same CATH superfamily
1D9NA 2KY8A 3VXVA 3VYBA 1UB1A 4LG7A 3C2IA 3VXXA 2MOEA 2MB7A 3VYQA 5BT2A 1IG4A 1QK9A
chains in the Genus database with same CATH topology
1D9NA 2KY8A 3VXVA 3VYBA 1UB1A 4LG7A 3C2IA 3VXXA 2MOEA 2MB7A 3VYQA 5BT2A 1IG4A 1QK9A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1D9N A;  2KY8 A;  3VXV A;  3VYB A;  1UB1 A;  4LG7 A;  3C2I A;  3VXX A;  2MOE A;  2MB7 A;  3VYQ A;  5BT2 A;  1IG4 A;  1QK9 A; 
#chains in the Genus database with same CATH topology
 1D9N A;  2KY8 A;  3VXV A;  3VYB A;  1UB1 A;  4LG7 A;  3C2I A;  3VXX A;  2MOE A;  2MB7 A;  3VYQ A;  5BT2 A;  1IG4 A;  1QK9 A; 
#chains in the Genus database with same CATH homology
 1D9N A;  2KY8 A;  3VXV A;  3VYB A;  1UB1 A;  4LG7 A;  3C2I A;  3VXX A;  2MOE A;  2MB7 A;  3VYQ A;  5BT2 A;  1IG4 A;  1QK9 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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