The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
14
|
sequence length |
64
|
structure length |
64
|
Chain Sequence |
NKASVVANQLIPINTALTLIMMKAEVVTPMGIPAEEIPKLVGMQVNRAVPLGTTLMPDMVKNYE
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
The refined crystal structure of an eel pout type III antifreeze protein RD1 at 0.62-(angstrom) resolution reveals structural microheterogeneity of protein and solvation
pubmed rcsb |
| molecule tags |
Antifreeze protein
|
| molecule keywords |
Antifreeze peptide RD1
|
| total genus |
14
|
| structure length |
64
|
| sequence length |
64
|
| ec nomenclature | |
| pdb deposition date | 2003-04-21 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF08666 | SAF | SAF domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | Alpha-Beta Complex | Type Iii Antifreeze Protein Isoform Hplc 12 | Antifreeze-like/N-acetylneuraminic acid synthase C-terminal domain |
#chains in the Genus database with same CATH superfamily 1B7K A; 6AME A; 1UCS A; 1KDF A; 3NLA A; 2MSI A; 9MSI A; 1XUU A; 1MSI A; 8AME A; 1XUZ A; 4UR6 A; 2MSJ A; 1C89 A; 4AME A; 5MSI A; 2AME A; 3RDN A; 1VLI A; 2LX2 A; 1KDE A; 2LX3 A; 3QF6 A; 1OPS A; 9AME A; 3G8R A; 1HG7 A; 1GZI A; 2ZDR A; 1MSJ A; 3MSI A; 2WQP A; 2SPG A; 4IPI A; 1B7I A; 1WVO A; 6MSI A; 1EKL A; 4MSI A; 7MSI A; 3FRN A; 1JAB A; 1B7J A; 4NY6 A; 7AME A; 8MSI A; 1C8A A; 4IPJ A; 1AME A; 2JIA A; 4UR4 A; 3CM4 A; 3AME A; #chains in the Genus database with same CATH topology 1B7K A; 3LAZ A; 6AME A; 1UCS A; 1KDF A; 3NLA A; 2MSI A; 9MSI A; 1XUU A; 3K3S A; 1MSI A; 8AME A; 1XUZ A; 4UR6 A; 2MSJ A; 1C89 A; 4AME A; 5MSI A; 2AME A; 3RDN A; 1VLI A; 2LX2 A; 1KDE A; 2LX3 A; 3QF6 A; 1OPS A; 9AME A; 3G8R A; 1HG7 A; 1GZI A; 2ZDR A; 1MSJ A; 3MSI A; 2WQP A; 2SPG A; 4IPI A; 1B7I A; 1WVO A; 6MSI A; 1EKL A; 4MSI A; 7MSI A; 3FRN A; 1JAB A; 1B7J A; 4NY6 A; 7AME A; 8MSI A; 1C8A A; 4IPJ A; 1AME A; 2JIA A; 4UR4 A; 3CM4 A; 3AME A; #chains in the Genus database with same CATH homology 1B7K A; 6AME A; 1UCS A; 1KDF A; 3NLA A; 2MSI A; 9MSI A; 1XUU A; 1MSI A; 8AME A; 1XUZ A; 4UR6 A; 2MSJ A; 1C89 A; 4AME A; 5MSI A; 2AME A; 3RDN A; 1VLI A; 2LX2 A; 1KDE A; 2LX3 A; 3QF6 A; 1OPS A; 9AME A; 3G8R A; 1HG7 A; 1GZI A; 2ZDR A; 1MSJ A; 3MSI A; 2WQP A; 2SPG A; 4IPI A; 1B7I A; 1WVO A; 6MSI A; 1EKL A; 4MSI A; 7MSI A; 3FRN A; 1JAB A; 1B7J A; 4NY6 A; 7AME A; 8MSI A; 1C8A A; 4IPJ A; 1AME A; 2JIA A; 4UR4 A; 3CM4 A; 3AME A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
