1UCS | Genus

Total Genus 14

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	14
sequence length	64
structure length	64
Chain Sequence	NKASVVANQLIPINTALTLIMMKAEVVTPMGIPAEEIPKLVGMQVNRAVPLGTTLMPDMVKNYE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 64 atoms

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64 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Antifreeze protein
publication title	The refined crystal structure of an eel pout type III antifreeze protein RD1 at 0.62-(angstrom) resolution reveals structural microheterogeneity of protein and solvation pubmed rcsb
molecule keywords	Antifreeze peptide RD1
total genus	14
structure length	64
sequence length	64
ec nomenclature
pdb deposition date	2003-04-21

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF08666	SAF	SAF domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.90.1210.10	Alpha Beta	Alpha-Beta Complex	Type Iii Antifreeze Protein Isoform Hplc 12	Antifreeze-like/N-acetylneuraminic acid synthase C-terminal domain	1ucsA00

9MSIA 1HG7A 2JIAA 3MSIA 9AMEA 4UR6A 1KDFA 4UR4A 6MSIA 7AMEA 1XUUA 3CM4A 1B7KA 3RDNA 2AMEA 1XUZA 2MSIA 2LX2A 4IPIA 4AMEA 1B7JA 4NY6A 1MSIA 2WQPA 2ZDRA 8AMEA 1OPSA 1WVOA 3NLAA 1C89A 1KDEA 5MSIA 8MSIA 3FRNA 1UCSA 7MSIA 2SPGA 1AMEA 1B7IA 1JABA 1C8AA 6AMEA 1MSJA 1GZIA 3AMEA 3QF6A 2MSJA 3G8RA 1EKLA 4IPJA 1VLIA 2LX3A 4MSIA
chains in the Genus database with same CATH superfamily

9MSIA 1HG7A 2JIAA 3MSIA 9AMEA 4UR6A 1KDFA 4UR4A 6MSIA 7AMEA 1XUUA 3CM4A 1B7KA 3RDNA 2AMEA 1XUZA 2MSIA 2LX2A 4IPIA 4AMEA 1B7JA 4NY6A 1MSIA 2WQPA 2ZDRA 8AMEA 1OPSA 1WVOA 3NLAA 1C89A 1KDEA 5MSIA 8MSIA 3FRNA 3LAZA 1UCSA 7MSIA 2SPGA 1AMEA 1B7IA 1JABA 1C8AA 6AMEA 1MSJA 1GZIA 3AMEA 3QF6A 3K3SA 2MSJA 3G8RA 1EKLA 4IPJA 1VLIA 2LX3A 4MSIA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 9MSI A;  1HG7 A;  2JIA A;  3MSI A;  9AME A;  4UR6 A;  1KDF A;  4UR4 A;  6MSI A;  7AME A;  1XUU A;  3CM4 A;  1B7K A;  3RDN A;  2AME A;  1XUZ A;  2MSI A;  2LX2 A;  4IPI A;  4AME A;  1B7J A;  4NY6 A;  1MSI A;  2WQP A;  2ZDR A;  8AME A;  1OPS A;  1WVO A;  3NLA A;  1C89 A;  1KDE A;  5MSI A;  8MSI A;  3FRN A;  1UCS A;  7MSI A;  2SPG A;  1AME A;  1B7I A;  1JAB A;  1C8A A;  6AME A;  1MSJ A;  1GZI A;  3AME A;  3QF6 A;  2MSJ A;  3G8R A;  1EKL A;  4IPJ A;  1VLI A;  2LX3 A;  4MSI A; 
#chains in the Genus database with same CATH topology
 9MSI A;  1HG7 A;  2JIA A;  3MSI A;  9AME A;  4UR6 A;  1KDF A;  4UR4 A;  6MSI A;  7AME A;  1XUU A;  3CM4 A;  1B7K A;  3RDN A;  2AME A;  1XUZ A;  2MSI A;  2LX2 A;  4IPI A;  4AME A;  1B7J A;  4NY6 A;  1MSI A;  2WQP A;  2ZDR A;  8AME A;  1OPS A;  1WVO A;  3NLA A;  1C89 A;  1KDE A;  5MSI A;  8MSI A;  3FRN A;  3LAZ A;  1UCS A;  7MSI A;  2SPG A;  1AME A;  1B7I A;  1JAB A;  1C8A A;  6AME A;  1MSJ A;  1GZI A;  3AME A;  3QF6 A;  3K3S A;  2MSJ A;  3G8R A;  1EKL A;  4IPJ A;  1VLI A;  2LX3 A;  4MSI A; 
#chains in the Genus database with same CATH homology
 9MSI A;  1HG7 A;  2JIA A;  3MSI A;  9AME A;  4UR6 A;  1KDF A;  4UR4 A;  6MSI A;  7AME A;  1XUU A;  3CM4 A;  1B7K A;  3RDN A;  2AME A;  1XUZ A;  2MSI A;  2LX2 A;  4IPI A;  4AME A;  1B7J A;  4NY6 A;  1MSI A;  2WQP A;  2ZDR A;  8AME A;  1OPS A;  1WVO A;  3NLA A;  1C89 A;  1KDE A;  5MSI A;  8MSI A;  3FRN A;  1UCS A;  7MSI A;  2SPG A;  1AME A;  1B7I A;  1JAB A;  1C8A A;  6AME A;  1MSJ A;  1GZI A;  3AME A;  3QF6 A;  2MSJ A;  3G8R A;  1EKL A;  4IPJ A;  1VLI A;  2LX3 A;  4MSI A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1UCSA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations