1WVO | Genus

Total Genus 12

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	12
sequence length	79
structure length	79
Chain Sequence	GSSGSSGSVVAKVKIPEGTILTMDMLTVKVGEPKGYPPEDIFNLVGKKVLVTVEEDDTIMEELVDNHGKKIKSSGPSSG

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Transferase
source organism	Homo sapiens
publication title	Solution structure of the antifreeze-like domain of human sialic acid synthase pubmed doi rcsb
molecule keywords	Sialic acid synthase
total genus	12
structure length	79
sequence length	79
ec nomenclature	ec 2.5.1.56: N-acetylneuraminate synthase.
pdb deposition date	2004-12-22

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.90.1210.10	Alpha Beta	Alpha-Beta Complex	Type Iii Antifreeze Protein Isoform Hplc 12	Antifreeze-like/N-acetylneuraminic acid synthase C-terminal domain	1wvoA00

3G8RA 2LX3A 1JABA 9MSIA 4UR6A 1MSJA 1UCSA 1GZIA 4AMEA 1XUUA 8AMEA 1WVOA 2MSJA 2WQPA 6MSIA 7MSIA 1B7JA 2LX2A 5MSIA 1OPSA 2SPGA 1KDFA 1EKLA 1HG7A 1KDEA 9AMEA 3CM4A 4IPJA 3NLAA 6AMEA 3QF6A 4MSIA 1B7IA 1XUZA 2JIAA 2ZDRA 4IPIA 8MSIA 4UR4A 3RDNA 1VLIA 3MSIA 1C8AA 3AMEA 1B7KA 7AMEA 1C89A 1AMEA 3FRNA 4NY6A 1MSIA 2AMEA 2MSIA
chains in the Genus database with same CATH superfamily

3G8RA 2LX3A 1JABA 9MSIA 4UR6A 1MSJA 1UCSA 1GZIA 4AMEA 1XUUA 8AMEA 1WVOA 2MSJA 2WQPA 6MSIA 7MSIA 1B7JA 2LX2A 5MSIA 1OPSA 2SPGA 1KDFA 1EKLA 1HG7A 1KDEA 9AMEA 3CM4A 4IPJA 3NLAA 6AMEA 3LAZA 3K3SA 3QF6A 4MSIA 1B7IA 1XUZA 2JIAA 2ZDRA 4IPIA 8MSIA 4UR4A 3RDNA 1VLIA 3MSIA 1C8AA 3AMEA 1B7KA 7AMEA 1C89A 1AMEA 3FRNA 4NY6A 1MSIA 2AMEA 2MSIA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 3G8R A;  2LX3 A;  1JAB A;  9MSI A;  4UR6 A;  1MSJ A;  1UCS A;  1GZI A;  4AME A;  1XUU A;  8AME A;  1WVO A;  2MSJ A;  2WQP A;  6MSI A;  7MSI A;  1B7J A;  2LX2 A;  5MSI A;  1OPS A;  2SPG A;  1KDF A;  1EKL A;  1HG7 A;  1KDE A;  9AME A;  3CM4 A;  4IPJ A;  3NLA A;  6AME A;  3QF6 A;  4MSI A;  1B7I A;  1XUZ A;  2JIA A;  2ZDR A;  4IPI A;  8MSI A;  4UR4 A;  3RDN A;  1VLI A;  3MSI A;  1C8A A;  3AME A;  1B7K A;  7AME A;  1C89 A;  1AME A;  3FRN A;  4NY6 A;  1MSI A;  2AME A;  2MSI A; 
#chains in the Genus database with same CATH topology
 3G8R A;  2LX3 A;  1JAB A;  9MSI A;  4UR6 A;  1MSJ A;  1UCS A;  1GZI A;  4AME A;  1XUU A;  8AME A;  1WVO A;  2MSJ A;  2WQP A;  6MSI A;  7MSI A;  1B7J A;  2LX2 A;  5MSI A;  1OPS A;  2SPG A;  1KDF A;  1EKL A;  1HG7 A;  1KDE A;  9AME A;  3CM4 A;  4IPJ A;  3NLA A;  6AME A;  3LAZ A;  3K3S A;  3QF6 A;  4MSI A;  1B7I A;  1XUZ A;  2JIA A;  2ZDR A;  4IPI A;  8MSI A;  4UR4 A;  3RDN A;  1VLI A;  3MSI A;  1C8A A;  3AME A;  1B7K A;  7AME A;  1C89 A;  1AME A;  3FRN A;  4NY6 A;  1MSI A;  2AME A;  2MSI A; 
#chains in the Genus database with same CATH homology
 3G8R A;  2LX3 A;  1JAB A;  9MSI A;  4UR6 A;  1MSJ A;  1UCS A;  1GZI A;  4AME A;  1XUU A;  8AME A;  1WVO A;  2MSJ A;  2WQP A;  6MSI A;  7MSI A;  1B7J A;  2LX2 A;  5MSI A;  1OPS A;  2SPG A;  1KDF A;  1EKL A;  1HG7 A;  1KDE A;  9AME A;  3CM4 A;  4IPJ A;  3NLA A;  6AME A;  3QF6 A;  4MSI A;  1B7I A;  1XUZ A;  2JIA A;  2ZDR A;  4IPI A;  8MSI A;  4UR4 A;  3RDN A;  1VLI A;  3MSI A;  1C8A A;  3AME A;  1B7K A;  7AME A;  1C89 A;  1AME A;  3FRN A;  4NY6 A;  1MSI A;  2AME A;  2MSI A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1WVOA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

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