1B7IA

Type iii antifreeze protein isoform hplc 12 k61r
Total Genus 14
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
14
sequence length
66
structure length
66
Chain Sequence
ANQASVVANQLIPINTALTLVMMRSEVVTPVGIPAEDIPRLVSMQVNRAVPLGTTLMPDMVRGYAA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Antifreeze protein
molecule keywords PROTEIN (ANTIFREEZE PROTEIN TYPE III)
publication title Quantitative and qualitative analysis of type III antifreeze protein structure and function.
pubmed doi rcsb
source organism Macrozoarces americanus
total genus 14
structure length 66
sequence length 66
ec nomenclature
pdb deposition date 1999-01-24
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1210.10 Alpha Beta Alpha-Beta Complex Type Iii Antifreeze Protein Isoform Hplc 12 Antifreeze-like/N-acetylneuraminic acid synthase C-terminal domain 1b7iA00
3RDNA 1B7JA 9MSIA 8AMEA 9AMEA 1C89A 2SPGA 1XUUA 3MSIA 4AMEA 1JABA 7MSIA 5MSIA 3CM4A 3G8RA 1HG7A 3AMEA 1WVOA 2LX2A 4IPJA 1OPSA 3FRNA 1C8AA 1KDEA 1KDFA 1EKLA 4UR4A 1AMEA 3QF6A 4UR6A 2LX3A 4NY6A 1XUZA 1GZIA 6AMEA 3NLAA 7AMEA 1UCSA 2ZDRA 1MSJA 2WQPA 2AMEA 1B7IA 1VLIA 1B7KA 4IPIA 2MSJA 4MSIA 2JIAA 8MSIA 2MSIA 1MSIA 6MSIA
chains in the Genus database with same CATH superfamily
3K3SA 3RDNA 1B7JA 9MSIA 8AMEA 9AMEA 1C89A 2SPGA 1XUUA 3LAZA 3MSIA 4AMEA 1JABA 7MSIA 5MSIA 3CM4A 3G8RA 1HG7A 3AMEA 1WVOA 2LX2A 4IPJA 1OPSA 3FRNA 1C8AA 1KDEA 1KDFA 1EKLA 4UR4A 1AMEA 3QF6A 4UR6A 2LX3A 4NY6A 1XUZA 1GZIA 6AMEA 3NLAA 7AMEA 1UCSA 2ZDRA 1MSJA 2WQPA 2AMEA 1B7IA 1VLIA 1B7KA 4IPIA 2MSJA 4MSIA 2JIAA 8MSIA 2MSIA 1MSIA 6MSIA
chains in the Genus database with same CATH topology
3RDNA 1B7JA 9MSIA 8AMEA 9AMEA 1C89A 2SPGA 1XUUA 3MSIA 4AMEA 1JABA 7MSIA 5MSIA 3CM4A 3G8RA 1HG7A 3AMEA 1WVOA 2LX2A 4IPJA 1OPSA 3FRNA 1C8AA 1KDEA 1KDFA 1EKLA 4UR4A 1AMEA 3QF6A 4UR6A 2LX3A 4NY6A 1XUZA 1GZIA 6AMEA 3NLAA 7AMEA 1UCSA 2ZDRA 1MSJA 2WQPA 2AMEA 1B7IA 1VLIA 1B7KA 4IPIA 2MSJA 4MSIA 2JIAA 8MSIA 2MSIA 1MSIA 6MSIA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3RDN A;  1B7J A;  9MSI A;  8AME A;  9AME A;  1C89 A;  2SPG A;  1XUU A;  3MSI A;  4AME A;  1JAB A;  7MSI A;  5MSI A;  3CM4 A;  3G8R A;  1HG7 A;  3AME A;  1WVO A;  2LX2 A;  4IPJ A;  1OPS A;  3FRN A;  1C8A A;  1KDE A;  1KDF A;  1EKL A;  4UR4 A;  1AME A;  3QF6 A;  4UR6 A;  2LX3 A;  4NY6 A;  1XUZ A;  1GZI A;  6AME A;  3NLA A;  7AME A;  1UCS A;  2ZDR A;  1MSJ A;  2WQP A;  2AME A;  1B7I A;  1VLI A;  1B7K A;  4IPI A;  2MSJ A;  4MSI A;  2JIA A;  8MSI A;  2MSI A;  1MSI A;  6MSI A; 
#chains in the Genus database with same CATH topology
 3K3S A;  3RDN A;  1B7J A;  9MSI A;  8AME A;  9AME A;  1C89 A;  2SPG A;  1XUU A;  3LAZ A;  3MSI A;  4AME A;  1JAB A;  7MSI A;  5MSI A;  3CM4 A;  3G8R A;  1HG7 A;  3AME A;  1WVO A;  2LX2 A;  4IPJ A;  1OPS A;  3FRN A;  1C8A A;  1KDE A;  1KDF A;  1EKL A;  4UR4 A;  1AME A;  3QF6 A;  4UR6 A;  2LX3 A;  4NY6 A;  1XUZ A;  1GZI A;  6AME A;  3NLA A;  7AME A;  1UCS A;  2ZDR A;  1MSJ A;  2WQP A;  2AME A;  1B7I A;  1VLI A;  1B7K A;  4IPI A;  2MSJ A;  4MSI A;  2JIA A;  8MSI A;  2MSI A;  1MSI A;  6MSI A; 
#chains in the Genus database with same CATH homology
 3RDN A;  1B7J A;  9MSI A;  8AME A;  9AME A;  1C89 A;  2SPG A;  1XUU A;  3MSI A;  4AME A;  1JAB A;  7MSI A;  5MSI A;  3CM4 A;  3G8R A;  1HG7 A;  3AME A;  1WVO A;  2LX2 A;  4IPJ A;  1OPS A;  3FRN A;  1C8A A;  1KDE A;  1KDF A;  1EKL A;  4UR4 A;  1AME A;  3QF6 A;  4UR6 A;  2LX3 A;  4NY6 A;  1XUZ A;  1GZI A;  6AME A;  3NLA A;  7AME A;  1UCS A;  2ZDR A;  1MSJ A;  2WQP A;  2AME A;  1B7I A;  1VLI A;  1B7K A;  4IPI A;  2MSJ A;  4MSI A;  2JIA A;  8MSI A;  2MSI A;  1MSI A;  6MSI A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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