2F3GA

Iiaglc crystal form iii
Total Genus 34

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
34
sequence length
150
structure length
150
Chain Sequence
TIEIIAPLSGEIVNIEDVPDVVFAEKIVGDGIAIKPTGNKMVAPVDGTIGKIFETNHAFSIESDSGVELFVHFGIDTVELKGEGFKRIAEEGQRVKVGDTVIEFDLPLLEEKAKSTLTPVVISNMDEIKELIKLSGSVTVGETPVIRIKK
2040608010012014014012010080604020
051015202530Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYS12 (148-151)TI4 (140-143)AH1 (39-43)O1 (36-38)TIV1 (24-27)S1 (20-23)S2 (28-31)S10 (117-122)3H1 (33-35)S8 (103-105)TII1 (100-103)3H2 (95-98)S4 (58-61)TI2 (71-74)S5 (65-70)TIV2 (92-95)AH2 (124-130)S6 (76-81)TII2 (114-117)TI3 (81-84)S9 (112-113)S7 (86-90)TI'1 (98-101)TIV3 (108-111)TIV4 (131-134)3H3 (143-145)S11 (136-140)TI1 (44-47)S3 (48-54)Updating...
connected with : NaN
molecule tags Phosphotransferase
publication title Structural studies of the Escherichia coli signal transducing protein IIAGlc: implications for target recognition.
pubmed doi rcsb
molecule keywords GLUCOSE-SPECIFIC PHOSPHOCARRIER
total genus 34
structure length 150
sequence length 150
chains with identical sequence B
ec nomenclature ec 2.7.1.69: Transferred entry: 2.7.1.191, 2.7.1.192, 2.7.1.193, 2.7.1.194, 2.7.1.195,
pdb deposition date 1997-10-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00358 PTS_EIIA_1 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.70.10 Mainly Beta Distorted Sandwich Glucose Permease (Domain IIA) Glucose Permease (Domain IIA) 2f3gA00
3SLUA 5KVPA 2GU1A 1F3GA 1GLAF 1F3ZA 1GLDF 4LXCA 5B0HA 3IT5A 4ZYBA 1QWYA 4RNZA 4RNYA 1GGRA 1GLEF 2F3GA 3TUFB 2HSIA 3CSQA 3OURB 2B0PA 1GPRA 2GPRA 1GLCF 3UZ0B 4JBWM 2B44A 1AX3A 3IT7A 2MP0B 1O2FA 1GLBF 4QPBA 3NYYA 2B13A 4BH5A 4QP5A
chains in the Genus database with same CATH superfamily
3SLUA 5KVPA 2GU1A 1F3GA 1GLAF 1F3ZA 1GLDF 4LXCA 5B0HA 3IT5A 4ZYBA 1QWYA 4RNZA 4RNYA 1GGRA 1GLEF 2F3GA 3TUFB 2HSIA 3CSQA 3OURB 2B0PA 1GPRA 2GPRA 1GLCF 3UZ0B 4JBWM 2B44A 1AX3A 3IT7A 2MP0B 1O2FA 1GLBF 4QPBA 3NYYA 2B13A 4BH5A 4QP5A
chains in the Genus database with same CATH topology
3SLUA 5KVPA 2GU1A 1F3GA 1GLAF 1F3ZA 1GLDF 4LXCA 5B0HA 3IT5A 4ZYBA 1QWYA 4RNZA 4RNYA 1GGRA 1GLEF 2F3GA 3TUFB 2HSIA 3CSQA 3OURB 2B0PA 1GPRA 2GPRA 1GLCF 3UZ0B 4JBWM 2B44A 1AX3A 3IT7A 2MP0B 1O2FA 1GLBF 4QPBA 3NYYA 2B13A 4BH5A 4QP5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3SLU A;  5KVP A;  2GU1 A;  1F3G A;  1GLA F;  1F3Z A;  1GLD F;  4LXC A;  5B0H A;  3IT5 A;  4ZYB A;  1QWY A;  4RNZ A;  4RNY A;  1GGR A;  1GLE F;  2F3G A;  3TUF B;  2HSI A;  3CSQ A;  3OUR B;  2B0P A;  1GPR A;  2GPR A;  1GLC F;  3UZ0 B;  4JBW M;  2B44 A;  1AX3 A;  3IT7 A;  2MP0 B;  1O2F A;  1GLB F;  4QPB A;  3NYY A;  2B13 A;  4BH5 A;  4QP5 A; 
#chains in the Genus database with same CATH topology
 3SLU A;  5KVP A;  2GU1 A;  1F3G A;  1GLA F;  1F3Z A;  1GLD F;  4LXC A;  5B0H A;  3IT5 A;  4ZYB A;  1QWY A;  4RNZ A;  4RNY A;  1GGR A;  1GLE F;  2F3G A;  3TUF B;  2HSI A;  3CSQ A;  3OUR B;  2B0P A;  1GPR A;  2GPR A;  1GLC F;  3UZ0 B;  4JBW M;  2B44 A;  1AX3 A;  3IT7 A;  2MP0 B;  1O2F A;  1GLB F;  4QPB A;  3NYY A;  2B13 A;  4BH5 A;  4QP5 A; 
#chains in the Genus database with same CATH homology
 3SLU A;  5KVP A;  2GU1 A;  1F3G A;  1GLA F;  1F3Z A;  1GLD F;  4LXC A;  5B0H A;  3IT5 A;  4ZYB A;  1QWY A;  4RNZ A;  4RNY A;  1GGR A;  1GLE F;  2F3G A;  3TUF B;  2HSI A;  3CSQ A;  3OUR B;  2B0P A;  1GPR A;  2GPR A;  1GLC F;  3UZ0 B;  4JBW M;  2B44 A;  1AX3 A;  3IT7 A;  2MP0 B;  1O2F A;  1GLB F;  4QPB A;  3NYY A;  2B13 A;  4BH5 A;  4QP5 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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