2F3G | Genus

Total Genus 34

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	34
sequence length	150
structure length	150
Chain Sequence	TIEIIAPLSGEIVNIEDVPDVVFAEKIVGDGIAIKPTGNKMVAPVDGTIGKIFETNHAFSIESDSGVELFVHFGIDTVELKGEGFKRIAEEGQRVKVGDTVIEFDLPLLEEKAKSTLTPVVISNMDEIKELIKLSGSVTVGETPVIRIKK

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 150 atoms

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150 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Phosphotransferase
publication title	Structural studies of the Escherichia coli signal transducing protein IIAGlc: implications for target recognition. pubmed doi rcsb
molecule keywords	GLUCOSE-SPECIFIC PHOSPHOCARRIER
total genus	34
structure length	150
sequence length	150
chains with identical sequence	B
ec nomenclature	ec 2.7.1.69: Transferred entry: 2.7.1.191, 2.7.1.192, 2.7.1.193, 2.7.1.194, 2.7.1.195,
pdb deposition date	1997-10-14

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00358	PTS_EIIA_1	phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.70.70.10	Mainly Beta	Distorted Sandwich	Glucose Permease (Domain IIA)	Glucose Permease (Domain IIA)	2f3gA00

2B13A 2GU1A 3CSQA 3OURB 1GLBF 3NYYA 1GPRA 2F3GA 1AX3A 3TUFB 2GPRA 2HSIA 1GLCF 1F3GA 4ZYBA 1GLAF 1QWYA 4BH5A 1F3ZA 2B0PA 3IT5A 4RNZA 3UZ0B 4QP5A 1GLDF 5KVPA 2B44A 4JBWM 4LXCA 1GGRA 2MP0B 4RNYA 1O2FA 1GLEF 3IT7A 4QPBA 5B0HA 3SLUA
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 2B13 A;  2GU1 A;  3CSQ A;  3OUR B;  1GLB F;  3NYY A;  1GPR A;  2F3G A;  1AX3 A;  3TUF B;  2GPR A;  2HSI A;  1GLC F;  1F3G A;  4ZYB A;  1GLA F;  1QWY A;  4BH5 A;  1F3Z A;  2B0P A;  3IT5 A;  4RNZ A;  3UZ0 B;  4QP5 A;  1GLD F;  5KVP A;  2B44 A;  4JBW M;  4LXC A;  1GGR A;  2MP0 B;  4RNY A;  1O2F A;  1GLE F;  3IT7 A;  4QPB A;  5B0H A;  3SLU A; 
#chains in the Genus database with same CATH topology
 2B13 A;  2GU1 A;  3CSQ A;  3OUR B;  1GLB F;  3NYY A;  1GPR A;  2F3G A;  1AX3 A;  3TUF B;  2GPR A;  2HSI A;  1GLC F;  1F3G A;  4ZYB A;  1GLA F;  1QWY A;  4BH5 A;  1F3Z A;  2B0P A;  3IT5 A;  4RNZ A;  3UZ0 B;  4QP5 A;  1GLD F;  5KVP A;  2B44 A;  4JBW M;  4LXC A;  1GGR A;  2MP0 B;  4RNY A;  1O2F A;  1GLE F;  3IT7 A;  4QPB A;  5B0H A;  3SLU A; 
#chains in the Genus database with same CATH homology
 2B13 A;  2GU1 A;  3CSQ A;  3OUR B;  1GLB F;  3NYY A;  1GPR A;  2F3G A;  1AX3 A;  3TUF B;  2GPR A;  2HSI A;  1GLC F;  1F3G A;  4ZYB A;  1GLA F;  1QWY A;  4BH5 A;  1F3Z A;  2B0P A;  3IT5 A;  4RNZ A;  3UZ0 B;  4QP5 A;  1GLD F;  5KVP A;  2B44 A;  4JBW M;  4LXC A;  1GGR A;  2MP0 B;  4RNY A;  1O2F A;  1GLE F;  3IT7 A;  4QPB A;  5B0H A;  3SLU A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2F3GA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations