2GPR | Genus

Total Genus 36

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	36
sequence length	154
structure length	154
Chain Sequence	MWFFNKNLKVLAPCDGTIITLDEVEDEVFKERMLGDGFAINPKSNDFHAPVSGKLVTAFPTKHAFGIQTKSGVEILLHIGLDTVSLDGNGFESFVTQDQEVNAGDKLVTVDLKSVAKKVPSIKSPIIFTNNGGKTLEIVKMGEVKQGDVVAILK

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 154 atoms

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1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

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154 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Phosphotransferase
source organism	Mycoplasma capricolum
publication title	A promiscuous binding surface: crystal structure of the IIA domain of the glucose-specific permease from Mycoplasma capricolum. pubmed doi rcsb
molecule keywords	GLUCOSE-PERMEASE IIA COMPONENT
total genus	36
structure length	154
sequence length	154
ec nomenclature	ec 2.7.1.69: Transferred entry: 2.7.1.191, 2.7.1.192, 2.7.1.193, 2.7.1.194, 2.7.1.195,
pdb deposition date	1998-05-19

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00358	PTS_EIIA_1	phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.70.70.10	Mainly Beta	Distorted Sandwich	Glucose Permease (Domain IIA)	Glucose Permease (Domain IIA)	2gprA00

4RNYA 4JBWM 4ZYBA 5B0HA 4BH5A 2B13A 1GLAF 2F3GA 4RNZA 2GPRA 5KVPA 3OURB 1GPRA 2GU1A 1GLEF 1F3GA 1GGRA 1F3ZA 1GLCF 4LXCA 3NYYA 1GLBF 3TUFB 3IT7A 3SLUA 3UZ0B 1AX3A 2MP0B 3IT5A 1O2FA 2B0PA 1QWYA 3CSQA 4QP5A 1GLDF 2B44A 2HSIA 4QPBA
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 4RNY A;  4JBW M;  4ZYB A;  5B0H A;  4BH5 A;  2B13 A;  1GLA F;  2F3G A;  4RNZ A;  2GPR A;  5KVP A;  3OUR B;  1GPR A;  2GU1 A;  1GLE F;  1F3G A;  1GGR A;  1F3Z A;  1GLC F;  4LXC A;  3NYY A;  1GLB F;  3TUF B;  3IT7 A;  3SLU A;  3UZ0 B;  1AX3 A;  2MP0 B;  3IT5 A;  1O2F A;  2B0P A;  1QWY A;  3CSQ A;  4QP5 A;  1GLD F;  2B44 A;  2HSI A;  4QPB A; 
#chains in the Genus database with same CATH topology
 4RNY A;  4JBW M;  4ZYB A;  5B0H A;  4BH5 A;  2B13 A;  1GLA F;  2F3G A;  4RNZ A;  2GPR A;  5KVP A;  3OUR B;  1GPR A;  2GU1 A;  1GLE F;  1F3G A;  1GGR A;  1F3Z A;  1GLC F;  4LXC A;  3NYY A;  1GLB F;  3TUF B;  3IT7 A;  3SLU A;  3UZ0 B;  1AX3 A;  2MP0 B;  3IT5 A;  1O2F A;  2B0P A;  1QWY A;  3CSQ A;  4QP5 A;  1GLD F;  2B44 A;  2HSI A;  4QPB A; 
#chains in the Genus database with same CATH homology
 4RNY A;  4JBW M;  4ZYB A;  5B0H A;  4BH5 A;  2B13 A;  1GLA F;  2F3G A;  4RNZ A;  2GPR A;  5KVP A;  3OUR B;  1GPR A;  2GU1 A;  1GLE F;  1F3G A;  1GGR A;  1F3Z A;  1GLC F;  4LXC A;  3NYY A;  1GLB F;  3TUF B;  3IT7 A;  3SLU A;  3UZ0 B;  1AX3 A;  2MP0 B;  3IT5 A;  1O2F A;  2B0P A;  1QWY A;  3CSQ A;  4QP5 A;  1GLD F;  2B44 A;  2HSI A;  4QPB A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2GPRA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations