2LX3A

1h,13c,15n assignments for an isoform of the type iii antifreeze protein from notched-fin eelpout
Total Genus 13
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
13
sequence length
67
structure length
67
Chain Sequence
MNQESVVAAQLIPINTALTLVMMTTRVVSPTGIPAEDIPRLISMQVNQVVPMGTTLMPDMVKGYAPA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title NMR structure note: a defective isoform and its activity-improved variant of a type III antifreeze protein from Zoarces elongates Kner
pubmed doi rcsb
molecule tags Antifreeze protein
source organism Zoarces elongatus
molecule keywords Type III antifreeze protein nfeAFP11
total genus 13
structure length 67
sequence length 67
ec nomenclature
pdb deposition date 2012-08-12
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1210.10 Alpha Beta Alpha-Beta Complex Type Iii Antifreeze Protein Isoform Hplc 12 Antifreeze-like/N-acetylneuraminic acid synthase C-terminal domain 2lx3A00
2MSJA 3G8RA 2LX2A 1KDEA 1C8AA 1UCSA 1MSIA 1XUUA 3FRNA 1B7JA 3CM4A 1VLIA 1B7IA 7MSIA 1WVOA 2LX3A 3RDNA 8AMEA 4NY6A 2AMEA 9AMEA 8MSIA 1HG7A 1AMEA 2JIAA 2SPGA 1C89A 3NLAA 6MSIA 1B7KA 1MSJA 4MSIA 1JABA 7AMEA 1OPSA 5MSIA 1XUZA 1GZIA 2ZDRA 1EKLA 2WQPA 3AMEA 4IPIA 4AMEA 9MSIA 4UR4A 3MSIA 2MSIA 4IPJA 1KDFA 6AMEA 4UR6A 3QF6A
chains in the Genus database with same CATH superfamily
2MSJA 3G8RA 2LX2A 1KDEA 1C8AA 1UCSA 1MSIA 1XUUA 3FRNA 1B7JA 3K3SA 3CM4A 1VLIA 1B7IA 7MSIA 1WVOA 2LX3A 3RDNA 8AMEA 4NY6A 2AMEA 9AMEA 8MSIA 1HG7A 1AMEA 2JIAA 2SPGA 1C89A 3NLAA 6MSIA 1B7KA 1MSJA 4MSIA 1JABA 7AMEA 1OPSA 5MSIA 1XUZA 1GZIA 3LAZA 2ZDRA 1EKLA 2WQPA 3AMEA 4IPIA 4AMEA 9MSIA 4UR4A 3MSIA 2MSIA 4IPJA 1KDFA 6AMEA 4UR6A 3QF6A
chains in the Genus database with same CATH topology
2MSJA 3G8RA 2LX2A 1KDEA 1C8AA 1UCSA 1MSIA 1XUUA 3FRNA 1B7JA 3CM4A 1VLIA 1B7IA 7MSIA 1WVOA 2LX3A 3RDNA 8AMEA 4NY6A 2AMEA 9AMEA 8MSIA 1HG7A 1AMEA 2JIAA 2SPGA 1C89A 3NLAA 6MSIA 1B7KA 1MSJA 4MSIA 1JABA 7AMEA 1OPSA 5MSIA 1XUZA 1GZIA 2ZDRA 1EKLA 2WQPA 3AMEA 4IPIA 4AMEA 9MSIA 4UR4A 3MSIA 2MSIA 4IPJA 1KDFA 6AMEA 4UR6A 3QF6A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2MSJ A;  3G8R A;  2LX2 A;  1KDE A;  1C8A A;  1UCS A;  1MSI A;  1XUU A;  3FRN A;  1B7J A;  3CM4 A;  1VLI A;  1B7I A;  7MSI A;  1WVO A;  2LX3 A;  3RDN A;  8AME A;  4NY6 A;  2AME A;  9AME A;  8MSI A;  1HG7 A;  1AME A;  2JIA A;  2SPG A;  1C89 A;  3NLA A;  6MSI A;  1B7K A;  1MSJ A;  4MSI A;  1JAB A;  7AME A;  1OPS A;  5MSI A;  1XUZ A;  1GZI A;  2ZDR A;  1EKL A;  2WQP A;  3AME A;  4IPI A;  4AME A;  9MSI A;  4UR4 A;  3MSI A;  2MSI A;  4IPJ A;  1KDF A;  6AME A;  4UR6 A;  3QF6 A; 
#chains in the Genus database with same CATH topology
 2MSJ A;  3G8R A;  2LX2 A;  1KDE A;  1C8A A;  1UCS A;  1MSI A;  1XUU A;  3FRN A;  1B7J A;  3K3S A;  3CM4 A;  1VLI A;  1B7I A;  7MSI A;  1WVO A;  2LX3 A;  3RDN A;  8AME A;  4NY6 A;  2AME A;  9AME A;  8MSI A;  1HG7 A;  1AME A;  2JIA A;  2SPG A;  1C89 A;  3NLA A;  6MSI A;  1B7K A;  1MSJ A;  4MSI A;  1JAB A;  7AME A;  1OPS A;  5MSI A;  1XUZ A;  1GZI A;  3LAZ A;  2ZDR A;  1EKL A;  2WQP A;  3AME A;  4IPI A;  4AME A;  9MSI A;  4UR4 A;  3MSI A;  2MSI A;  4IPJ A;  1KDF A;  6AME A;  4UR6 A;  3QF6 A; 
#chains in the Genus database with same CATH homology
 2MSJ A;  3G8R A;  2LX2 A;  1KDE A;  1C8A A;  1UCS A;  1MSI A;  1XUU A;  3FRN A;  1B7J A;  3CM4 A;  1VLI A;  1B7I A;  7MSI A;  1WVO A;  2LX3 A;  3RDN A;  8AME A;  4NY6 A;  2AME A;  9AME A;  8MSI A;  1HG7 A;  1AME A;  2JIA A;  2SPG A;  1C89 A;  3NLA A;  6MSI A;  1B7K A;  1MSJ A;  4MSI A;  1JAB A;  7AME A;  1OPS A;  5MSI A;  1XUZ A;  1GZI A;  2ZDR A;  1EKL A;  2WQP A;  3AME A;  4IPI A;  4AME A;  9MSI A;  4UR4 A;  3MSI A;  2MSI A;  4IPJ A;  1KDF A;  6AME A;  4UR6 A;  3QF6 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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