2MP0 | Genus

Total Genus 34

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	34
sequence length	149
structure length	149
Chain Sequence	TIEIIAPLSGEIVNIEDVPDVVFAEKIVGDGIAIKPTGNKMVAPVDGTIGKIFETNHAFSIESDSGVELFVHFGIDTVELKGEGFKRIAEEGQRVKVGDTVIEFDLPLLEEKAKSTLTPVVISNMDEIKELIKLSGSVTVGETPVIRIK

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 149 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

Default Van der Waals type for model set to Jmol

149 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Time for creating model: 20 ms

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

molecule tags	Transferase
source organism	Escherichia coli
publication title	Visualizing an Ultra-Weak Protein-Protein Interaction in Phosphorylation Signaling doi rcsb
molecule keywords	Phosphoenolpyruvate-protein phosphotransferase
total genus	34
structure length	149
sequence length	149
ec nomenclature
pdb deposition date	2014-05-08

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
B	PF00358	PTS_EIIA_1	phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.70.70.10	Mainly Beta	Distorted Sandwich	Glucose Permease (Domain IIA)	Glucose Permease (Domain IIA)	2mp0B00

1GLEF 2GU1A 2B13A 3OURB 4RNYA 2B0PA 5KVPA 1GLCF 3IT7A 4LXCA 4RNZA 1GLBF 2MP0B 1F3ZA 1GPRA 2F3GA 5B0HA 3CSQA 4JBWM 4QP5A 3IT5A 2B44A 1QWYA 1AX3A 3UZ0B 4QPBA 1GLAF 3SLUA 1O2FA 4ZYBA 1F3GA 2GPRA 2HSIA 1GGRA 3NYYA 4BH5A 1GLDF 3TUFB
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 1GLE F;  2GU1 A;  2B13 A;  3OUR B;  4RNY A;  2B0P A;  5KVP A;  1GLC F;  3IT7 A;  4LXC A;  4RNZ A;  1GLB F;  2MP0 B;  1F3Z A;  1GPR A;  2F3G A;  5B0H A;  3CSQ A;  4JBW M;  4QP5 A;  3IT5 A;  2B44 A;  1QWY A;  1AX3 A;  3UZ0 B;  4QPB A;  1GLA F;  3SLU A;  1O2F A;  4ZYB A;  1F3G A;  2GPR A;  2HSI A;  1GGR A;  3NYY A;  4BH5 A;  1GLD F;  3TUF B; 
#chains in the Genus database with same CATH topology
 1GLE F;  2GU1 A;  2B13 A;  3OUR B;  4RNY A;  2B0P A;  5KVP A;  1GLC F;  3IT7 A;  4LXC A;  4RNZ A;  1GLB F;  2MP0 B;  1F3Z A;  1GPR A;  2F3G A;  5B0H A;  3CSQ A;  4JBW M;  4QP5 A;  3IT5 A;  2B44 A;  1QWY A;  1AX3 A;  3UZ0 B;  4QPB A;  1GLA F;  3SLU A;  1O2F A;  4ZYB A;  1F3G A;  2GPR A;  2HSI A;  1GGR A;  3NYY A;  4BH5 A;  1GLD F;  3TUF B; 
#chains in the Genus database with same CATH homology
 1GLE F;  2GU1 A;  2B13 A;  3OUR B;  4RNY A;  2B0P A;  5KVP A;  1GLC F;  3IT7 A;  4LXC A;  4RNZ A;  1GLB F;  2MP0 B;  1F3Z A;  1GPR A;  2F3G A;  5B0H A;  3CSQ A;  4JBW M;  4QP5 A;  3IT5 A;  2B44 A;  1QWY A;  1AX3 A;  3UZ0 B;  4QPB A;  1GLA F;  3SLU A;  1O2F A;  4ZYB A;  1F3G A;  2GPR A;  2HSI A;  1GGR A;  3NYY A;  4BH5 A;  1GLD F;  3TUF B;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2MP0B

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

pfam database annotations