2R6GG

The crystal structure of the e. coli maltose transporter
Total Genus 87
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
87
sequence length
290
structure length
284
Chain Sequence
KSQKARLFITHLLLLLFIAAIMFPLLMVVAISLRQGNFATGSLIPEQISWDHWKLALGFSVITPPPFPVLLWLWNSVKVAGISAIGIVALSTTCAYAFARMRFPGKATLLKGMLIFQMFPAVLSLVALYALFDRLGEYIPFIGLNTHGGVIFAYLGGIALHVWTIKGYFETIDSSLEEAAALDGATPWQAFRLVLLPLSVPILAVVFILSFIAAITEVPVASLLLRDVNSYTLAVGMQQYLNPQNYLWGDFAAAAVMSALPITIVFLLAQRWLVNGLTAGGVKG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of a catalytic intermediate of the maltose transporter.
pubmed doi rcsb
molecule tags Hydrolase/transport protein
source organism Escherichia coli
molecule keywords Maltose/maltodextrin import ATP-binding protein malK
total genus 87
structure length 284
sequence length 290
ec nomenclature
pdb deposition date 2007-09-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
G PF00528 BPD_transp_1 Binding-protein-dependent transport system inner membrane component
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.3720.10 Mainly Alpha Orthogonal Bundle MetI-like fold MetI-like 2r6gG01
4KHZG 3PUWG 3PUXG 3DHWA 4XTCN 4YMWC 4JBWF 4TQUM 3D31C 3RLFF 2ONKC 3PUYF 4YMTB 4XTCM 4KI0G 4KHZF 4YMSC 3PUWF 3PUXF 3PUZG 3PV0G 3PUVG 4KI0F 2R6GG 4XIGN 3TUZA 3TUJA 3PUVF 3PUZF 3PV0F 3TUIA 4JBWG 4TQUN 3RLFG 4YMUC 2R6GF 3PUYG 4XIGM 4YMVC
chains in the Genus database with same CATH superfamily
4KHZG 3PUWG 3PUXG 3DHWA 4XTCN 4YMWC 4JBWF 4TQUM 3D31C 3RLFF 2ONKC 3PUYF 4YMTB 4XTCM 4KI0G 4KHZF 4YMSC 3PUWF 3PUXF 3PUZG 3PV0G 3PUVG 4KI0F 2R6GG 4XIGN 3TUZA 3TUJA 3PUVF 3PUZF 3PV0F 3TUIA 4JBWG 4TQUN 3RLFG 4YMUC 2R6GF 3PUYG 4XIGM 4YMVC
chains in the Genus database with same CATH topology
4KHZG 3PUWG 3PUXG 3DHWA 4XTCN 4YMWC 4JBWF 4TQUM 3D31C 3RLFF 2ONKC 3PUYF 4YMTB 4XTCM 4KI0G 4KHZF 4YMSC 3PUWF 3PUXF 3PUZG 3PV0G 3PUVG 4KI0F 2R6GG 4XIGN 3TUZA 3TUJA 3PUVF 3PUZF 3PV0F 3TUIA 4JBWG 4TQUN 3RLFG 4YMUC 2R6GF 3PUYG 4XIGM 4YMVC
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4KHZ G;  3PUW G;  3PUX G;  3DHW A;  4XTC N;  4YMW C;  4JBW F;  4TQU M;  3D31 C;  3RLF F;  2ONK C;  3PUY F;  4YMT B;  4XTC M;  4KI0 G;  4KHZ F;  4YMS C;  3PUW F;  3PUX F;  3PUZ G;  3PV0 G;  3PUV G;  4KI0 F;  2R6G G;  4XIG N;  3TUZ A;  3TUJ A;  3PUV F;  3PUZ F;  3PV0 F;  3TUI A;  4JBW G;  4TQU N;  3RLF G;  4YMU C;  2R6G F;  3PUY G;  4XIG M;  4YMV C; 
#chains in the Genus database with same CATH topology
 4KHZ G;  3PUW G;  3PUX G;  3DHW A;  4XTC N;  4YMW C;  4JBW F;  4TQU M;  3D31 C;  3RLF F;  2ONK C;  3PUY F;  4YMT B;  4XTC M;  4KI0 G;  4KHZ F;  4YMS C;  3PUW F;  3PUX F;  3PUZ G;  3PV0 G;  3PUV G;  4KI0 F;  2R6G G;  4XIG N;  3TUZ A;  3TUJ A;  3PUV F;  3PUZ F;  3PV0 F;  3TUI A;  4JBW G;  4TQU N;  3RLF G;  4YMU C;  2R6G F;  3PUY G;  4XIG M;  4YMV C; 
#chains in the Genus database with same CATH homology
 4KHZ G;  3PUW G;  3PUX G;  3DHW A;  4XTC N;  4YMW C;  4JBW F;  4TQU M;  3D31 C;  3RLF F;  2ONK C;  3PUY F;  4YMT B;  4XTC M;  4KI0 G;  4KHZ F;  4YMS C;  3PUW F;  3PUX F;  3PUZ G;  3PV0 G;  3PUV G;  4KI0 F;  2R6G G;  4XIG N;  3TUZ A;  3TUJ A;  3PUV F;  3PUZ F;  3PV0 F;  3TUI A;  4JBW G;  4TQU N;  3RLF G;  4YMU C;  2R6G F;  3PUY G;  4XIG M;  4YMV C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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